Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002510.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq3439 104 4e-19 seq3283 98.7 2e-17 seq22495 93.3 7e-16 seq5745 89.7 9e-15 seq54129 87.8 3e-14 seq35612 84.2 4e-13 seq4104 78.8 2e-11 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1687 TCTAAATACTCTTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATG 1746 ||||| || |||||| || | | || || ||||||| || | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1747 CCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCC 1806 || |||||||||||||||||||| ||||| |||| |||| ||||| | ||||| Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1807 CCCATGAACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACG 1860 || | ||||| | | | || ||| | ||||| ||| |||||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1861 TTATACCATGCGTCATT 1877 ||||||||||| ||||| Sbjct 810 TTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1698 TTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||| || || || || |||||||| || | ||| |||| || || |||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1758 TTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTC 1817 |||||||||||||||||| |||| ||| ||||| | ||||| || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1818 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1871 | | | || ||| | ||||| ||| || || || ||||||||||||||||| Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1872 GTCATT 1877 ||||| Sbjct 2119 ATCATT 2114 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1698 TTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||| || ||| || || |||||||| || | ||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1758 TTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTC 1817 |||||||||||| ||||| |||| ||| ||||||| ||||| || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1818 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1871 | | | || ||| | ||||| ||| | ||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1872 GTCATT 1877 ||||| Sbjct 206 ATCATT 201 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/200 (70%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1687 TCTAAATACTCTTTATAAGAGGAATTGGGACCT---GGATTGCAGAGGAAGATTGTTGGG 1743 ||||| || |||||||||| ||| ||||| |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1744 ATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGT 1803 || || |||||||||||||||||||| ||||| |||| || ||||| | |||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1804 GCCCCCATGAACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATG 1857 || || ||||||| | | | ||||| | |||| || | ||||| ||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1858 ACGTTATACCATGCGTCATT 1877 ||||||||||||||||| || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1714 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCG 1773 || || |||||||| || | ||| |||| || || ||||||||||||| |||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1774 TATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTCCT--TAAAG--TGTT- 1828 || |||| ||| || |||| | ||||| || | ||||| | ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1829 -TCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATT 1877 | | ||||| ||| ||||| || ||||||||||||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1698 TTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||| || ||| || || |||||||| || | ||| |||| ||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1758 TTGAACTGGTTTCCCGTATTTTGTGTTGCTTTGCCA 1793 |||||||||||| ||||| |||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1698 TTTATAAGAGGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||| || ||| ||| || |||||||| || | ||| |||| || || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1758 TTGAACTGGTTTCCCGTATTTTG 1780 |||||||||||| ||||| |||| Sbjct 20786 TTGAACTGGTTTTCCGTACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8727691217700