Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002543.1 Length=3080 Score E Sequences producing significant alignments: (Bits) Value seq3283 86.0 1e-13 seq22495 80.6 5e-12 >seq3283 Length=49157 Score = 86.0 bits (94), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2052 CCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTA- 2110 |||||||| ||||||| || | || | ||| ||| |||||||||| ||||||||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 2111 TTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTCATCTT 2170 |||||| | || | |||| | | || || || | || || || |||||||| | | Sbjct 2220 TTTGCATTGGCCT-GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 2171 CAAGTATGTCGGGGCTACGTCATCTATGACGTTATA 2206 || || |||| | ||||| || ||||||||||| Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATA 2126 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2052 CCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTA- 2110 |||||||| ||||||| || | | | ||| | | |||||||||| ||||| ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 2111 TTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTCATCTT 2170 |||||| | || | |||||| | || || || | || || || ||||||||| | | Sbjct 307 TTTGCATTGGCCT-GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 2171 CAAGTATGTCGGGGCTACGTCATCTATGACGTTATA 2206 || || |||| | | |||||| ||||||||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9734459938875