Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002555.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq5745 113 7e-22 seq22495 98.7 2e-17 seq3439 98.7 2e-17 seq3283 98.7 2e-17 seq33 96.9 6e-17 seq1993 95.1 2e-16 seq77518 86.0 1e-13 seq5493 86.0 1e-13 seq1010 84.2 4e-13 seq54129 80.6 4e-12 seq35612 80.6 4e-12 seq4295 78.8 2e-11 seq4104 77.0 5e-11 >seq5745 Length=45059 Score = 113 bits (124), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 ||||||||||||| |||||| ||||| || |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTT 1818 ||| || ||||| ||||||| | ||| || || || || | || | || ||| | Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1819 TAGATAGTGCGGTGCGATGTCATCGATGACGTTATA 1854 || ||| || | ||||||||| ||||||||||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATA 43695 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 |||||||||||||| ||||| | | | || || | ||||||||||||||| |||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCT--TTAAC 1816 ||| || || | ||||| | | || || || | || | || || |||| |||| Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA- 250 Query 1817 TTTAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATA 1872 ||| ||| | ||| | ||||||||||||||||||||| ||| |||||| || Sbjct 249 -TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA 195 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 200/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1759 ||| |||||||||| ||||| | ||| || || ||||||||||||||||| |||||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1760 TTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTT--TAACT 1817 || ||| | ||||||| | || || || | || | || | ||||| ||| Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA-- 843 Query 1818 TTAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACCC 1877 ||| ||| | ||| | || ||||||||||||||||| ||| |||||| || Sbjct 842 TTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1878 TAGGATTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACA 1937 | | ||| ||||| | || | | || || || | ||||||| ||| ||||| Sbjct 782 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 723 Query 1938 TCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGGTCGTTCCGG 1992 || || || ||| || |||||||| || || || || || ||||| || Sbjct 722 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTCAGG 668 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 |||||||||||||| ||||| | ||| || || ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCT--TTAAC 1816 ||| || || | ||||||| | || || || | || | || | |||| |||| Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA- 2163 Query 1817 TTTAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACC 1876 ||| ||| | ||| | || ||| |||||||||||||| ||| |||||| || Sbjct 2162 -TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1877 CTAGGATTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCAC 1936 | | ||| ||||| | || | | || || || | ||||||| ||| ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1937 ATCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGGTCGTTCCGG 1992 || || || ||| || |||||||| || || || || || ||||| || Sbjct 2043 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTCAGG 1988 >seq33 Length=454124 Score = 96.9 bits (106), Expect = 6e-17 Identities = 200/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 |||||||||||||||||||| ||||| || || | ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTT 1818 ||| || ||||| ||||| | | || | || | || | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1819 TAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACCCT 1878 || ||| || | || |||||| ||||||||||| | | || || || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1879 AGGATTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACAT 1938 | ||| ||||| | || | | |||||||| | || || | ||||||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1939 CGTCTTTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGGTCGTTCCGG 1992 || ||| | ||| |||| |||||||| || || || | || ||||| || Sbjct 403063 TGT-TTTTCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCCGTTCGGG 403011 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 1697 TCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCG 1756 || |||||||||||||||||||| ||||| || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1757 TA-TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAA 1815 || ||| || ||||| ||||||| | ||| || | | || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1816 CTTTAGATAGTGCGGTGCGATGTCATCGATGACGTTATA 1854 ||| ||| || | || |||||| ||||||||||| Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATA 74249 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 |||||||||||||| ||||| ||||| || || |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTT 1818 ||| || ||||| || || | | ||| || || | || | || | |||||| | Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1819 TAGATAGTGCGGTGCGATGTCATCGATGACGTTATA 1854 || ||| || | || ||||| ||||||||||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 >seq5493 Length=32325 Score = 86.0 bits (94), Expect = 1e-13 Identities = 115/155 (74%), Gaps = 9/155 (6%) Strand=Plus/Minus Query 1703 GGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTT- 1761 |||||||| | ||| || |||| ||| |||| ||||||||||||||| || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1762 ACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTTT-- 1819 ||| ||||||||||| | ||| | || || | |||||||| |||| |||| Sbjct 31499 ACA-TTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCA--GCTT---CTTTGC 31446 Query 1820 AGATAGTGCGGTGCGATGTCATCGATGACGTTATA 1854 ||||| ||||| | |||||| |||| ||| || Sbjct 31445 AGATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 >seq1010 Length=204159 Score = 84.2 bits (92), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 || |||||||| |||||||| |||||||| | |||||||||||||| | || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCA 1806 || ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 36544 TTGACA-TGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCA 36590 Score = 84.2 bits (92), Expect = 4e-13 Identities = 188/281 (67%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1704 GATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1763 ||||||| |||||||| ||| |||| | ||||||||| |||||| || ||||| ||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1764 AGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTT-TAGA 1822 ||||||||||||| ||| ||| ||| | |||||||| || ||| || | | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1823 TAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACCCTAGGA 1882 ||| | | | |||||| || || ||||| ||| ||| ||| | | | | Sbjct 40794 TAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAA 40735 Query 1883 TTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACATCGTC 1942 || ||||| | | || | | || ||||| | ||||| | ||| |||| || ||| Sbjct 40734 TTAAAATCTATGAAGCCCATTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATTGTC 40675 Query 1943 TTTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGG 1983 ||||| ||| || |||||| | ||| ||| |||| Sbjct 40674 TTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGG 40634 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 4e-12 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTA- 1758 |||||||||||||| ||||| | ||| || || ||||||||||||| ||| |||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1759 TTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCT--TTAAC 1816 ||| || || | || || | || || || | || | || | |||| |||| Sbjct 2197 TTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA- 2140 Query 1817 TTTAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATA 1872 ||| ||| | ||| | || || |||||||||||||| |||| |||||| || Sbjct 2139 -TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 4e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1759 |||||||||||||| ||||| | ||| || || ||||||||||||||||| |||||||| Sbjct 1510 CCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTAC 1569 Query 1760 TTACAGTTTGATTGCCAAT 1778 || ||| | ||||||| Sbjct 1570 TTTGCGTTGGCCTGCCAAT 1588 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 163/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1703 GGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTA 1762 |||||| | |||||||| |||||||| || |||||||||||| |||| || ||||| || Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1763 CAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTTTAGA 1822 ||||| | ||||| |||||| |||| | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1823 TAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACCCTAGGA 1882 ||| | | | |||||| || ||||| || ||| ||| ||| | | | | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAA 46664 Query 1883 TTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACATCGTC 1942 || ||||| | | || | | || ||||| | | ||| | |||||||| || ||| Sbjct 46663 TTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTC 46604 Query 1943 TTT 1945 ||| Sbjct 46603 TTT 46601 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 5e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1759 |||||||||||||| ||||| | ||| || || ||||||||||||||||| |||||||| Sbjct 20827 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 20768 Query 1760 TT 1761 || Sbjct 20767 TT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8273723396120