Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002817.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq3439 123 4e-25 seq54129 109 1e-20 seq22495 109 1e-20 seq3283 109 1e-20 seq77518 93.3 7e-16 seq490 89.7 9e-15 seq20728 82.4 1e-12 seq815 78.8 2e-11 seq35612 77.0 6e-11 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 1702 GATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTATTTTG 1761 ||||||| || | |||| | ||||| |||||||||| ||||| ||| |||||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1762 TGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTT------TAGAT 1815 |||| ||||| | | || || || | ||| | | | ||||| || || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1816 AATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACTTTTGGAC 1875 ||| |||| |||||||| ||||||||||||||||| ||||| || || ||||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTA-CGTTTTGGAA 778 Query 1876 TT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCA 1927 || || || ||||| || || ||| || ||||| |||||||| | |||||| Sbjct 777 TTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq54129 Length=2260 Score = 109 bits (120), Expect = 1e-20 Identities = 172/242 (71%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1695 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCG 1754 || || |||||||| || | |||| | ||||| |||||||||| ||||||||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1755 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTT---- 1810 || |||| ||| || |||| || || || | ||| | | | ||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1811 --TAGATAATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACT 1868 || ||||| |||| ||||| || ||||||||||||||| | ||||| || ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1869 TTTGGACTT--AAGTC-TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1925 |||||| || || || ||||| || || ||| || ||| | | |||||| | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1926 CA 1927 || Sbjct 2023 CA 2022 >seq22495 Length=567 Score = 109 bits (120), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1695 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCG 1754 || || |||||||| || | |||| | |||| |||| ||||| ||||| ||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1755 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTT---- 1810 || |||| ||| ||||||| | || || || | ||| | | || ||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1811 --TAGATAATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACT 1868 || ||||| |||| | ||||| ||||||||||||||||| ||||| || || | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA-CGT 192 Query 1869 TTTGGACTT-AAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGA 1918 |||||| || || || ||| || || ||| || ||||| |||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 172/242 (71%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1695 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCG 1754 || || |||||||| || | |||| | ||||| |||||||||| ||||| ||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1755 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTT---- 1810 || |||| ||| ||||| | | || || || | ||| | | | ||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1811 --TAGATAATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACT 1868 || ||||| |||| || || || ||||||||||||||||| ||||| || || | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CGT 2105 Query 1869 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1925 |||||| || || || ||||| || || ||| || ||||| |||||||| | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1926 CA 1927 || Sbjct 2046 CA 2045 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTAT 1757 || |||||||| || | |||| ||||| |||||||||| ||||| || ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1758 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTT------ 1811 |||| || || |||| | ||| || || | ||| | | | |||||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1812 AGATAATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACTTTT 1871 | |||| ||| ||||||||||||||||||||||| ||||| || || ||| ||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1872 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAAT 1930 | | || || | || | ||| || ||||||||||| || || | | ||||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1931 AGTTTTGCCG 1940 ||||| ||| Sbjct 2161 TGTTTTACCG 2152 >seq490 Length=137872 Score = 89.7 bits (98), Expect = 9e-15 Identities = 165/235 (70%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 1703 ATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTATTTTGT 1762 |||||| |||| || | || || || ||||||| ||| |||||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1763 GTTGCTTTGCCAGTCCCTTTG---GGCCCCAAAGAATTCCTTCCAGTGCTTT----AGAT 1815 | ||||||| || || |||||||| | ||| |||| ||||| ||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1816 A-ATGC-GGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACTTTTGG 1873 | |||| ||| || ||||| |||||||||||||||| ||||| ||| || ||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1874 ACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCA 1927 | | || || | || | ||| | |||||||||||||| || || |||||||| Sbjct 70441 ATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCA 70388 >seq20728 Length=3653 Score = 82.4 bits (90), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 1722 GGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTT 1781 ||||| || ||||||| ||||| ||| |||||||| |||| ||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1782 TGGGCCCCAAAGAATTCCTTCCAGTGCTTT------AGATAATGCGGATCAACATCATCA 1835 || || || | ||| | | | |||||| | ||||| |||| || ||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1836 ATGACGTTATACCATGCGTCATTAGAATATACTTTTGGACTTAAGTCTAAATGACCACA- 1894 ||||||||||| ||||| ||||| || || ||| | | | || |||| | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCAT 1619 Query 1895 TAAGTAATTATGTGGCCCTAATGACCTAGCCCA 1927 || ||| || ||||| ||||||| | |||||| Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCA 1652 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 165/242 (68%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1695 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCG 1754 || || |||||||| || | ||| | ||||| |||||||||| |||| || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1755 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTT---- 1810 || |||| ||| | ||||| | || || || | ||| | | | | ||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1811 --TAGATAATGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACT 1868 || ||||| | || || || || ||||||||||||||||| ||||| || || | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CGT 85246 Query 1869 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1925 |||||| || || || ||||| || || ||| || |||| |||||| | | |||| Sbjct 85245 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188 Query 1926 CA 1927 || Sbjct 85187 CA 85186 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1695 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCG 1754 || || |||||||| || | |||| | |||||||||||||||| ||||| ||| |||||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1755 TATTTTGTGTTGCTTTGCCA 1774 || |||| |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8733840575700