Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002981.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3283 132 8e-28 seq3439 127 4e-26 seq22495 123 4e-25 seq80468 104 4e-19 seq953 104 4e-19 seq442 104 4e-19 seq815 102 1e-18 seq54129 96.9 6e-17 seq35612 87.8 3e-14 seq4104 87.8 3e-14 seq77518 86.0 1e-13 seq30129 86.0 1e-13 seq5745 86.0 1e-13 seq33 86.0 1e-13 seq20728 84.2 4e-13 seq3059 84.2 4e-13 seq1993 84.2 4e-13 >seq3283 Length=49157 Score = 132 bits (146), Expect = 8e-28 Identities = 151/202 (75%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | || ||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||||| |||||||||||||| | ||| ||||| | || || || || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | |||| ||| ||| | |||| |||||| || |||||||||||||| || Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1832 ATCATTACTGTACACTTTTGGA 1853 |||||| |||| ||||||| Sbjct 2119 ATCATTTGAGTAC-GTTTTGGA 2099 >seq3439 Length=62978 Score = 127 bits (140), Expect = 4e-26 Identities = 150/202 (74%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | | | ||||| ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||||| ||||| |||||||| | |||| ||||| | || || || || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | |||| ||| ||| | |||| ||| ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1832 ATCATTACTGTACACTTTTGGA 1853 |||||| |||| ||||||| Sbjct 799 ATCATTTGAGTAC-GTTTTGGA 779 >seq22495 Length=567 Score = 123 bits (136), Expect = 4e-25 Identities = 149/202 (74%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| ||||| |||||||| || | |||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||||| ||||| |||||||| | ||| ||||||| | || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | |||| ||| ||| | |||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1832 ATCATTACTGTACACTTTTGGA 1853 |||||| |||| ||||||| Sbjct 206 ATCATTTGAGTAC-GTTTTGGA 186 >seq80468 Length=4946 Score = 104 bits (114), Expect = 4e-19 Identities = 135/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| ||||| ||||||| || | |||| | ||||||||||||||||| Sbjct 4250 TTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAAT 4309 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 ||||||||||| |||||||| || ||| | ||| | | || || || | ||||| Sbjct 4310 CTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGT-GCTGTGCGCCTACGAACTG 4368 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | |||| ||| ||| | | | |||||| | |||||||||||||| || Sbjct 4369 TTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGC 4428 Query 1832 ATCATT 1837 || ||| Sbjct 4429 ATAATT 4434 >seq953 Length=224861 Score = 104 bits (114), Expect = 4e-19 Identities = 185/268 (69%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| ||||| |||||||| | | |||| | ||||| ||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 ||||| | ||| |||||||| | ||| ||||| | || || | || | ||||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | | || ||| ||| | |||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1832 ATCATTACTGTACACTTTTGGACTCAGGTCGAGATGACCGCA-CAAATAATTGTGTGGTC 1890 |||||| |||| ||| | | | | || | | | | || | || |||||||| | Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGC 2062 Query 1891 CTAGTGACCTGGCCCACATTGTTTTTCC 1918 ||| ||| | ||||| |||||| || Sbjct 2063 CTAATGAACGAGCCCATGCTGTTTTCCC 2090 >seq442 Length=237535 Score = 104 bits (114), Expect = 4e-19 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | |||| ||||| |||||||| || |||| | ||||| |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||||| | ||| |||||||| | ||| ||| ||| || ||| || || | ||||| Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | |||| ||| ||| | || | |||||| || || |||||||||| || Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1832 ATCATT 1837 |||||| Sbjct 22940 ATCATT 22945 >seq815 Length=151552 Score = 102 bits (112), Expect = 1e-18 Identities = 145/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| ||||| |||||||| || | ||| | ||||| ||||||||||| Sbjct 85439 TTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||| | ||||| ||||||| | ||| | ||||| | || || || | ||||| Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 || | | | || ||| ||| | | || |||||| || |||||||||||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1832 ATCATTACTGTACACTTTTGGA 1853 |||||| |||| ||||||| Sbjct 85260 ATCATTTGAGTAC-GTTTTGGA 85240 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1674 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCG 1733 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1734 TACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1788 ||||| | ||| || |||| || || || | ||||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1789 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATT 1837 ||| ||| | |||| ||| || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| ||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCA 1753 |||||| ||||| |||||||| | |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||||| | ||| |||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1718 TTGAACAGGTTTCCCGTACTT 1738 |||||| ||||| |||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTT 20766 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTAC 1736 || |||||||| || | |||| ||||| ||||||||||||||||| | ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1737 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1790 || | || || |||| | ||| || || | ||||| || | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1791 AGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATT 1837 | ||| ||| ||| |||||||||||||||||||| || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq30129 Length=3650 Score = 86.0 bits (94), Expect = 1e-13 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||| ||| | ||| ||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 2355 TTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2414 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 |||||| |||| |||||||| | ||| ||||| | || || || || | ||||| Sbjct 2415 TTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2474 Query 1778 TTTAAAGTGCTT 1789 || | | ||||| Sbjct 2475 TTGATAATGCTT 2486 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1677 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTAC 1736 || |||||||| | | |||| ||||| || |||||||||||||| ||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1737 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1790 || | || ||||| | | ||| || || ||||||| || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1791 AGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATT 1837 | ||| ||| || ||||||||||||||||||||| || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTAC 1736 || |||||||| || | |||| ||||| |||| |||||||||||| ||||| |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1737 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1790 || | || ||||||| | || | || | ||||| || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1791 AGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATT 1837 | ||| ||| |||||||||||||||||||||||| || || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1701 GGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTT 1760 ||||| || ||||||||||||| ||||| |||||||| | ||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1761 TGGGCCCCCATGAACTCTTTAAAGTGCTTT------AGATAGTGCGGATCGACGTCATCA 1814 || || || | ||||| || | | |||||| | ||| | |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1815 ATGACGTTATACCAGGCATCATT 1837 ||||||||||| || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 118/166 (71%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 1658 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1717 ||||| | | ||| ||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 20435 TTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20376 Query 1718 TTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTC 1777 ||||| ||||| ||||| || | ||| | ||||| | || || || | ||||| Sbjct 20375 TTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTG 20316 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATG 1817 || | | |||| ||| ||| | |||| |||||| |||||| Sbjct 20315 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq1993 Length=81530 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1677 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTAC 1736 || |||||||| || | |||| ||||| ||| ||||||||||||| ||||| |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1737 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1790 || | || ||||| | | ||| || | | ||||| || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1791 AGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGC 1831 | ||| ||| |||||||||||||||||||||||| || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676539913860