Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002984.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq33 109 9e-21 seq5745 105 1e-19 seq3283 105 1e-19 seq3439 102 1e-18 seq1993 95.1 2e-16 seq22495 93.3 7e-16 seq77518 89.7 9e-15 seq490 89.7 9e-15 seq20728 78.8 2e-11 seq5493 78.8 2e-11 seq953 78.8 2e-11 >seq33 Length=454124 Score = 109 bits (120), Expect = 9e-21 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 1533 TCTTTATCGAGGAAATCTTTATAAGATGCCCCCTCT-----CCTGGATTGCACAGCACGA 1587 ||| |||||| ||| |||||||||| | |||| || |||||||| ||||||| Sbjct 403340 TCTATATCGAAGAACGCTTTATAAGA---CAACTCTGGACCCCAGGATTGCAAAGCACGA 403284 Query 1588 TTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGTTGGACTGCCAA 1646 | |||| || || | ||||||||||||||| ||||| || ||| || || |||||||| Sbjct 403283 TACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTTGACTGCCAG 403225 Query 1647 TCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGAGCGACG 1706 | | || | |||| || | || | || ||| ||| || |||| |||| Sbjct 403224 TTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACG 403165 Query 1707 TCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCCTAGAATTGAAATCCA 1761 ||||||||||||||||| || ||||| ||||| || ||||| ||||||| Sbjct 403164 TCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCA 403110 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 205/300 (68%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 1533 TCTTTATCGAGGAAATCTTTATAAGAT------GCCCCCTCTCCTGGATTGCACAGCACG 1586 ||| |||| | ||| ||||||||||| | ||| || |||||||| | |||| Sbjct 43502 TCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCC---CCAGGATTGCAAATCACG 43558 Query 1587 ATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGTTGGACTGCCA 1645 || |||| || || ||||||||||||||||| || || || ||| || || |||||||| Sbjct 43559 ATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA-TTTGACTGCCA 43617 Query 1646 ATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGAGCGAC 1705 || | ||| || ||||| || | || | || ||| ||| || |||| || Sbjct 43618 ATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGAT 43677 Query 1706 GTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCCTAGAATTGAAATCCAGGTG 1765 |||||||||||||||||| || ||||| || || | ||||| ||||||| Sbjct 43678 GTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAA 43737 Query 1766 ACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCACATCGTCTTCCCCGTTCTTGA 1825 || | | |||||| || || |||||||| | ||| | || || || |||| || Sbjct 43738 GCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTAGA 43797 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 193/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1568 TCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA 1627 ||| |||||||| || ||||| ||| || || ||||||||||||||||| || || || Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1628 -TTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCT 1686 ||| || |||| |||||||| | || || |||| || | || | ||||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1687 TTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCC 1746 ||| || | ||||| |||||| || ||||||||||| || || |||||||| Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1747 TAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCACA 1806 | ||||| ||||||| || | | || ||||| |||||| ||||| | ||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1807 TCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTATACT 1846 || ||||| ||||||| ||||| || || || || Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCT 2003 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 187/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 1573 GATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATATTTAC 1632 ||||||| || ||||| ||| || || ||||||||||||||||| ||||| || || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1633 AGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGT 1692 ||||| ||||||| | || || |||| || | || | ||||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1693 ATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCCTAGAAT 1752 | | ||||| ||| ||||| ||||||||||| || || |||||||| | |||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1753 TGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCACATCGTCT 1812 | ||||||| || | | || ||||| |||||| ||||| | ||| || | Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1813 TCCCCGTTCTTGAGTCACCTTCTATGATTATACT 1846 |||| ||||||| ||||| || || || || Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCT 683 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 1566 TCTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCA 1625 || || |||||||| |||||||| |||| || || |||||||||||||||| || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1626 TA-TTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAG 1684 || ||| || || |||||||||| | ||| || | || || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1685 CTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAAC 1744 ||| || |||| ||||||||||||||||||||| || | ||| || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1745 CCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCA 1804 | ||||| ||||||| || | | |||||| || || |||||||| | ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1805 CATCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTAT 1843 | || || || |||| || ||||| || || || Sbjct 74167 AACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 1568 TCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA 1627 ||| |||||||| || ||||| | | || || | ||||||||||||||| ||||| || Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1628 -TTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCT 1686 ||| || |||| |||||| | | || || |||| || | || || ||||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1687 TTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCC 1746 ||| || | ||||| || |||||| ||||||||||| || || |||||||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 190 Query 1747 TAGAATTGAAATCCA 1761 | ||||| ||||||| Sbjct 189 TGGAATTAAAATCCA 175 >seq77518 Length=14724 Score = 89.7 bits (98), Expect = 9e-15 Identities = 193/286 (67%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 1463 ATAGAGGGGGCCTTCGAGGAAGATGAACTGGGCATTTTTGATCGTCCACTCTCTTAGGCT 1522 |||||| || |||| |||| ||| | ||||||| | |||||| | || | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1523 TTCATTTTCCTCTTTATCGAGGAAATCTTTATAAGAT------GCCCCCTCTCCTGGATT 1576 | |||| ||| ||| | ||| ||||||||||| | ||| || ||||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCC---CCAGGATT 2393 Query 1577 GCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGT 1635 ||| || ||||| |||| || || |||||||||||||||| ||| | || ||| || | Sbjct 2392 GCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATT 2333 Query 1636 TGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGTATT 1695 || |||| || | | ||| || |||| || | || | |||||| ||| || Sbjct 2332 TG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAG 2274 Query 1696 GCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTA 1741 |||| ||| ||||||||||||||||| || ||||| ||||| Sbjct 2273 CTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTA 2228 >seq490 Length=137872 Score = 89.7 bits (98), Expect = 9e-15 Identities = 188/275 (68%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 1457 GCTTTGATAGA-GGGGGCCTTCGAGGAAGATGAACTGGGCATTTTTGATCGTCCACTCTC 1515 |||| ||||| ||||| || | | || | ||| | |||||| ||||||||||||| Sbjct 70738 GCTTCTATAGAAGGGGGTGTTGGCGAAATA-GAATTCTGCATTTGCAATCGTCCACTCTC 70680 Query 1516 TTAGGCTTTCATTTTCCTCTTTATCGAGGAAATCTTTATAAGATGCCCC----CTCTCCT 1571 ||| |||| | | ||||| | ||| ||||||||| || ||||| | Sbjct 70679 TTATATACGCATTAACATTCTTATCCAAGAATGATTTATAAGAGTAGCCTGTACTCTCAT 70620 Query 1572 GGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATATTTA 1631 |||||| || || |||||||| ||||| ||||||||||| | |||||| ||||||| Sbjct 70619 T-ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTT 70561 Query 1632 CAGTTGGACTGCCA---ATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1688 | | | ||||| || | | |||||| || | || |||| ||||| | Sbjct 70560 GAATCAGCTTGCCAGCTATGC---TTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAG 70504 Query 1689 AGGTATTGCGGAGCGACGTCATCAATGACGTTATA 1723 || || |||| ||||||||| ||||||||||| Sbjct 70503 AGAGATGCTGGAGGGACGTCATCTATGACGTTATA 70469 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 121/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 1592 TGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGTTGGACTGCCAATCCC 1650 ||| || || ||||||||||||| ||| ||||| || ||| || |||| ||||| | | Sbjct 1441 TGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG 1499 Query 1651 TTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGAGCGACGTCAT 1710 | | || |||| || | || | |||||| ||| || | ||||| |||||||| Sbjct 1500 CT-GTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1711 CAATGACGTTATATTCGGCTTCGTTTGAGTAAACCCTAGAATTGAAATC 1759 | |||||||||||| || || |||||||| | ||||| ||||| Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATC 1607 >seq5493 Length=32325 Score = 78.8 bits (86), Expect = 2e-11 Identities = 170/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 1481 GAAGATGAACTGGGCATTTTTGATCGTCCACTCTCTTAGGCTTTCATTTTCCTCTTTATC 1540 ||||| ||| | ||||||| || |||||| | || ||| ||| || || || Sbjct 31653 GAAGAAGAATTCTGCATTTTCGAGCGTCCATGTTTTTCAAATTTAATTACACTTTTGTTC 31594 Query 1541 GAGGAAATCTTTATAAGA---TGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGAT 1597 || || ||||||| || | | || | ||||||||||| ||| || ||| ||| Sbjct 31593 AAGAAATGCTTTATAGGAATATTCTCCGGTGCATGGATTGCACATCACAATACATGTGAT 31534 Query 1598 TCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGTTGGACTGCCAATCCCTTTGGG 1656 ||| | ||||||||||||||| || || || || ||| || || ||||| | ||| | Sbjct 31533 TCCACTTTTAATTTGAACTGGTTTACCGTACTTCACA-TTTGATTGCCAGTTGTATTGAG 31475 Query 1657 CCCCTATCAATTCTTTCCAG-TGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCAATG 1715 || | | ||||||||| | |||| || || ||| ||| | |||||||||||| Sbjct 31474 ACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---AGATATGTCGGTGATACGTCATCAATG 31419 Query 1716 ACGTTATA 1723 | ||| || Sbjct 31418 ATGTTGTA 31411 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 187/280 (67%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1568 TCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA 1627 ||| |||||||| | ||||| ||| || || ||||||||||||| || ||||| || Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1628 -TTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCT 1686 ||| || ||| |||||||| | || | |||| || | || | | |||| Sbjct 1902 CTTTGCA-TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960 Query 1687 TTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCC 1746 ||| || | ||||| |||||| || || |||||||| || || |||||||| Sbjct 1961 TTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTTT 2020 Query 1747 TAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCACA 1806 | ||||| ||||||| | | | || ||||| |||||| ||||| | ||| Sbjct 2021 TCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2080 Query 1807 TCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTATACT 1846 || ||||| ||||||| ||||| || || || || Sbjct 2081 CTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCT 2120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8305692961020