Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003199.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq77518 93.3 7e-16 seq5745 91.5 3e-15 seq22495 89.7 9e-15 seq4104 87.8 3e-14 seq3439 87.8 3e-14 seq1993 87.8 3e-14 seq80468 78.8 2e-11 seq54129 78.8 2e-11 seq35612 78.8 2e-11 seq30129 78.8 2e-11 seq6801 77.0 6e-11 seq3059 77.0 6e-11 seq442 77.0 6e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| ||| ||||||| || ||||| |||||||| || | ||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1774 |||||||||||||||||||| |||||||| |||| ||| | ||||| | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1775 CCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAATGAC 1828 || | ||||| | | | |||| ||| |||| || |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1829 GTTAAACCAGGCGTCATT 1846 |||| |||| || ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 171/247 (69%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 1611 GCATTCTTTAAAGCCCA--ATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTT 1668 ||||| | ||||| ||| ||||| | | ||||| ||| |||||| || ||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTT--GAATTTGAATCTAAATCCAAGAATGCTT 2421 Query 1669 TATA-GCTAGAATTGGGTCCT--GGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAA 1725 |||| | || | ||| || |||||||| || | ||| ||||| |||||||||| Sbjct 2420 TATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAA 2361 Query 1726 TTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACT 1785 ||||||||| || |||| |||| |||||| || |||| ||| || || | ||||| Sbjct 2360 TTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACT 2301 Query 1786 CCTTAAAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGG 1839 | | | |||| ||| ||| ||| ||| ||||||||||||||| |||| | Sbjct 2300 GTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACG 2241 Query 1840 CGTCATT 1846 |||| || Sbjct 2240 CGTCGTT 2234 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1655 ATCCAAAAACTCTTTATA-GCTAGAATTGGGTCCT--GGATTGCAGAGGAAGATGGTGGG 1711 ||| || ||| ||||||| | || | ||| || |||||||| | | ||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1712 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTG 1771 ||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1772 GGCCCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAAT 1825 || || ||||||| | | | || | ||| ||| ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1826 GACGTTAAACCAGGCGTCATT 1846 ||||||| |||| ||||| || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1667 TTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAAT 1726 ||||||| ||| ||||| |||||||| || | ||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1727 TTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTC 1786 ||||||||| || ||||| |||| ||| | ||||||| || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1787 CTTAAAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGC 1840 | | | |||| ||| |||| || || |||||| ||||||||| |||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1841 GTCATT 1846 ||||| Sbjct 206 ATCATT 201 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| ||| ||||||| ||| |||||| |||||||| || | ||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTAT 1752 |||||||||||||||||||| || ||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTG-GGTCCTGGATTGCAGAGGAAGATGGTGGGAA 1713 ||| || ||| ||||||| | |||| ||||| ||||||| || | ||| | |||| Sbjct 991 ATCTAAGAACGTTTTATAGG-ATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAA 933 Query 1714 TTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGG 1773 | |||||||||||||||||||| || ||||| |||| || | ||||| | || | Sbjct 932 TCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTG 873 Query 1774 CCCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAATGA 1827 | || | ||||| | | | |||| ||| |||| || ||| ||||| |||| Sbjct 872 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGA 813 Query 1828 CGTTAAACCAGGCGTCATT 1846 ||||| |||| || ||||| Sbjct 812 CGTTATACCATGCATCATT 794 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1686 CCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1745 || |||||||| || | ||| ||||| ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1746 TTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TT 1799 |||| |||||| ||||| | ||| || | | ||||| | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1800 AGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGCGT 1842 | ||| ||| ||||||||||||||||||| |||| |||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGT 74241 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 163/242 (67%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 1611 GCATTCTTTAAAGCCCAATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTTTA 1670 ||||| | ||||| |||| |||| ||||| ||| || ||| || |||| Sbjct 4194 GCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAATGTTTTA 4253 Query 1671 TAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAATTTGA 1730 ||| ||| ||||| ||||||| || | ||| | ||||||||||||||||| ||| Sbjct 4254 TAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGA 4313 Query 1731 ACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTA 1790 || || || ||||| |||||||| | | ||| | | || || || | ||||| | | Sbjct 4314 ACAGGTTTTCCGTACTTTGTATTGGCCTACCA-TTGTGCTGTGCGCCTACGAACTGTTGA 4372 Query 1791 AAGTGCT------TTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGCGTCA 1844 | |||| ||| |||| || |||||| | ||||||||| |||| || | | Sbjct 4373 TAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAA 4432 Query 1845 TT 1846 || Sbjct 4433 TT 4434 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 ||||| |||||||| || | ||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1797 || |||| ||| | || |||| | || || || | ||||| | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGCGTCATT 1846 ||| |||| || ||| || || ||||||||| |||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| || ||||||| ||| ||||| |||||||| || | ||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1762 |||||||||||||||||||| || ||||| |||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| ||| ||| ||| ||| ||||| |||||||| || | ||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1762 |||||||||||||||||| | || ||||| |||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 6e-11 Identities = 85/113 (75%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCT---GGATTGCAGAGGAAGATGGTGGG 1711 |||||| ||| |||||||| ||| || || ||| |||| || | ||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1712 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1764 ||| |||||||||||||||||||| || ||||| |||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| ||| ||||| | ||| ||||| |||||||| || | ||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1764 |||||||||||||||| ||| || ||||| |||| ||| | | ||||| Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 104/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1655 ATCCAAAAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAAT 1714 |||||| || ||||||| |||| ||||| |||||||| || ||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1715 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1774 |||||||||||||||||| || ||||| |||| ||| | ||| ||| ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1775 CCCCATGAACTCCTTAAAGTGCTTT 1799 || | ||||| | | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800