Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003357.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq3283 107 3e-20 seq3439 100 5e-18 seq22495 84.2 4e-13 seq35612 80.6 5e-12 seq5745 77.0 6e-11 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 222/331 (67%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 1610 GAATTCTGCATTCTTTATTGCCCACGCTTTGAGTGCTGAATTCTTGTCCTCGTCCAAGTA 1669 |||||||||||| | || | ||| | ||| |||||| ||| |||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1670 CTCTTTATATGATGACGTAGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1729 | |||||| ||| ||| || |||||||| || | |||| | ||||| || ||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1730 AATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1789 |||||||| ||| ||||||||||| | ||| ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1790 TTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCCACGTCATCAATGACGTTGTACCA 1843 | || | | |||| ||| || | || ||||| || |||||||| ||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1844 CGCATCATTGCTGTACACTTTTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGG 1903 |||||||| |||| ||| | | | | || | | || || || |||||||| Sbjct 2122 TGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGG 2063 Query 1904 GCCCAATGATCTGGCCCACATTGTCTTCCCT 1934 ||| ||||| | ||||| ||| |||||| Sbjct 2062 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 220/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 1611 AATTCTGCATTCTTTATTGCCCACGCTTTGAGTGCTGAATTCTTGTCCTCGTCCAAGTAC 1670 ||||||||||| | || | ||| | ||| |||||| ||| || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1671 TCTTTATATGATGACGTAGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTA 1730 |||||| ||| | ||| || ||||||| || | |||| | ||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1731 ATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1790 ||||||| ||| || |||||||| | |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1791 TCTTTAAAGTGCT------TTAGGTAGTGGGGGTCCACGTCATCAATGACGTTGTACCAC 1844 | || | | |||| ||| || | || || ||||| |||||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1845 GCATCATTGCTGTACACTTTTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGGG 1904 |||||||| |||| ||| | | | | || | | || || || ||||||||| Sbjct 801 GCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1905 CCCAATGATCTGGCCCACATTGTCTTCCCT 1934 || ||||| | ||||| ||| |||||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 166/246 (67%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1673 TTTATATGATGACGTAGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1732 |||||| ||| | ||| || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1733 TTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1792 ||||| ||| || |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1793 TTTAAAGTGCT------TTAGGTAGTGGGGGTCCACGTCATCAATGACGTTGTACCACGC 1846 || | | |||| ||| || | || | |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1847 ATCATTGCTGTACACTTTTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGGGCC 1906 |||||| |||| ||| | | | | || | | || || || ||||||||||| Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1907 CAATGA 1912 ||||| Sbjct 146 TAATGA 141 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 113/159 (71%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1610 GAATTCTGCATTCTTTATTGCCCACGCTTTGAGTGCTGAATTCTTGTCCTCGTCCAAGTA 1669 |||||||||||| | || | ||| | ||| |||||| ||| |||||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1670 CTCTTTATATGATGACGTAGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1729 |||||| ||| | ||| || |||||||| || | |||| | ||||| || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1730 AATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCA 1768 |||||||| ||| || |||||||| | |||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 168/250 (67%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 1692 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1751 || |||||||| | | |||| ||||| |||||||||||||||| ||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1752 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1809 || | || ||||| | | ||| || || ||||| | || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1810 A------GTGGGGGTCCACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACTT 1863 | ||| || | ||||||||||||||| ||||| || || || || || Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1864 TTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGGGCCCAATGATCTGGCCCACA 1923 | | | ||| || | | || || |||||| ||||| ||||| || | ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1924 TTGTCTTCCC 1933 ||| || || Sbjct 43779 CTGTTTTACC 43788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641373392470