Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003418.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq3439 132 8e-28 seq3283 125 1e-25 seq5745 118 2e-23 seq77518 104 4e-19 seq33 104 4e-19 seq1993 98.7 2e-17 seq22495 95.1 2e-16 seq35612 93.3 7e-16 seq4104 93.3 7e-16 seq953 93.3 7e-16 seq4295 86.0 1e-13 >seq3439 Length=62978 Score = 132 bits (146), Expect = 8e-28 Identities = 234/339 (69%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 1592 AATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAAC 1651 ||| ||||||||| || || ||| | |||| || ||| || ||| ||||| ||| Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1652 TCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTTA 1711 ||||||| | | || || ||||||| || | ||| ||||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1712 ATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAAT 1771 ||||||||||| || |||||||||| ||| | ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1772 TCTTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATAATGTTGAACCAC 1825 | || | | || ||| | ||||| ||| |||||||| || | ||| |||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1826 GCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTATGTGG 1884 ||||| ||||| ||| ||| | | | ||||| | |||| || || || ||||| Sbjct 801 GCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGG 743 Query 1885 CCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGA 1923 || || ||||| |||||| ||||||||| |||| || Sbjct 742 GCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGA 704 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 233/340 (69%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||||| || || ||| | |||| || ||| || ||| || || || Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTT 1710 | ||||||| | | || || |||||||| || | ||| ||||||| || ||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1711 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1770 |||||||||||| ||||||||||||| || | ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1771 TTCTTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATAATGTTGAACCA 1824 | || | | || ||| | ||||| ||| || || || || | ||| |||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1825 CGCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTATGTG 1883 ||||| ||||| ||| ||| | | | ||||| | |||| || || || |||| Sbjct 2122 TGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTG 2064 Query 1884 GCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGA 1923 | || || ||||| |||||| ||||||||| |||| || Sbjct 2063 GGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGA 2024 >seq5745 Length=45059 Score = 118 bits (130), Expect = 2e-23 Identities = 233/342 (68%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 1592 AATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAAC 1651 ||| | ||||||| ||||| | ||| |||| || ||| || || ||||| ||| Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATTTGAATTTGAATCTATATCTAAGAAC 43516 Query 1652 TCTTTATAGCTTGCGTTGGGGCCT---GGATTGCAGAGGAAGATTGTTGGAATGCCTCCT 1708 ||||||| | | || || |||||||| | | ||| |||||| || ||| Sbjct 43517 GCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCT 43576 Query 1709 TTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATG 1768 |||||||||||||| || |||||||||| ||||| ||||| | | ||| || || ||| Sbjct 43577 TTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATG 43636 Query 1769 AATTCTTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATAATGTTGAAC 1822 || | || | | ||||| | |||| || | ||||| || | ||| || Sbjct 43637 AACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATAC 43696 Query 1823 CACGCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTATG 1881 || || ||||| || || ||| | | | ||||| | ||||| || ||||||||| Sbjct 43697 CATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCAT-TATATAATTATG 43755 Query 1882 TGGCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGA 1923 ||| ||||| ||||| ||||| |||||| || ||||||| Sbjct 43756 TGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTAGA 43797 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 230/342 (67%), Gaps = 11/342 (3%) Strand=Plus/Minus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||||| ||||| ||||| ||| || ||| || || || || || Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCT---GGATTGCAGAGGAAGATTGTTGGAATGCCTCC 1707 ||||||| | | || || |||||||| || | ||| |||||| || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1708 TTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCAT 1767 |||||||||||||| || ||||||||| ||||| || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1768 GAATTCTTTAAAGTGTT------TCAGATAATGCGGGTCAACATCATCTATAATGTTGAA 1821 ||| | || | | || | | | |||| || |||||||| || | ||| | Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 Query 1822 CCACGCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTAT 1880 |||||| ||||| || || ||| | | ||||| | ||||| || |||||||| Sbjct 2245 CCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCA-TTATATAATTAT 2187 Query 1881 GTGGCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAG 1922 |||| ||||| |||| ||||| |||||| || |||||| Sbjct 2186 GTGGACCCAACTAACGTGCCCAAACTGTTTTACCGATTCTAG 2145 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 232/342 (68%), Gaps = 11/342 (3%) Strand=Plus/Minus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||| | ||||| ||||| |||| || ||| || || || || || Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1651 CTCTTTATA-GCTTGCGTTGGGGCCT-GGATTGCAGAGGAAGATTGTTGGAATGCCTCCT 1708 | ||||||| | | ||| || |||||||| || | ||| |||||| || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1709 TTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATG 1768 |||||||||||||| || |||||||||| ||||| ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1769 AATTCTTTAAAGTGTT------TCAGATAATGCGGGTCAACATCATCTATAATGTTGAAC 1822 || | || | | || | | | |||| || || ||||| || | ||| || Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATAC 403147 Query 1823 CACGCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTATG 1881 ||||| ||||| || || | | | | | ||||| | ||||| || |||||||| Sbjct 403146 CACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCA-TTATGTAATTATG 403088 Query 1882 TGGCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGA 1923 ||| ||||| ||||| ||||| |||||| || ||||||| Sbjct 403087 TGGACCCAACGAACGTGCCCAAACTGTTTT-TCAATTCTAGA 403047 >seq1993 Length=81530 Score = 98.7 bits (108), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1673 CCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1732 || |||||||| || | ||| |||||| || |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1733 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTT------TC 1786 |||| ||||| ||||| | | ||| || | | ||| | || | | || | | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1787 AGATAATGCGGGTCAACATCATCTATAATGTTGAACCACGCATCGTTTGAATACACTTTA 1846 | |||| || || ||||| || | ||| ||||||| | ||| || || ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1847 GGGCTTAGATCCA-AGTGCCCACATAAATAATTATGTGGCCCCAAGGAACGGGCCCATTG 1905 | | | ||||| | ||||| || |||||||||||| ||||| ||||| | ||| Sbjct 74223 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGTCCAAAC 74165 Query 1906 TGTTTTCCCAGTTCTAGA 1923 |||||| || ||||||| Sbjct 74164 TGTTTTACCGATTCTAGA 74147 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 208/312 (67%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| || |||||| ||||| ||| | |||| || ||| || ||| ||||| || Sbjct 449 GAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAA 390 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTT 1710 ||||||| | | || || |||||||| || | ||| || |||| || | ||| Sbjct 389 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTT 330 Query 1711 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1770 |||||||||||| || |||||||||| || | ||||||| | || || || | ||| Sbjct 329 AATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAA 270 Query 1771 TTCTTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATAATGTTGAACCA 1824 | || | | || ||| | ||||| ||| | ||||| || | ||| |||| Sbjct 269 CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCA 210 Query 1825 CGCATCGTTTGAATACACTTTAGGGCTTAGATCCAAGTGCCCACATAAATAATTATGTGG 1884 ||||| ||||| ||| ||| | | | |||||| || || || || ||||| Sbjct 209 TGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGG 150 Query 1885 CCCCAAGGAACG 1896 || || ||||| Sbjct 149 GCCTAATGAACG 138 >seq35612 Length=1588 Score = 93.3 bits (102), Expect = 7e-16 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||||| || || ||| | |||| || ||| || ||| || || || Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTT 1710 ||||||| | | || || |||||||| || | ||| |||||||||| ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1711 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCA 1749 |||||||||||| || |||||||||| ||| | ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 93.3 bits (102), Expect = 7e-16 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||||| || || ||| | |||| || ||| || ||| || || || Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTT 1710 | ||||||| | | ||| || |||||||| || | ||| ||||||| || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1711 AATTTGAACTGGCTTCCCGTACTTTG 1736 |||||||||||| || |||||||||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTTTG 20764 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 1591 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCTAAAAA 1650 |||| ||||||||| ||||| ||| | |||| || ||| || || ||||| || Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAA 1820 Query 1651 CTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTT 1710 ||||||| | | || || |||||||| | | ||| ||||||| || ||||| Sbjct 1821 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTT 1880 Query 1711 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1770 |||||||| || || |||||||||| || ||||| | | || | || | ||| Sbjct 1881 AATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAA 1940 Query 1771 TTCTT--TAA-AGTGTT---TCAGATAATGCGGGTCAACATCATCTATAATGTTGAACCA 1824 | || ||| | | || | | ||||| ||| || || || |||| ||| |||| Sbjct 1941 CTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCA 2000 Query 1825 CGCATCGTTTGAATACACTTTAGGGCTTAGATCCA-AGTGCCCACATAAATAATTATGTG 1883 ||||| ||||| ||| ||| | | | ||||| | | || || || || |||| Sbjct 2001 TGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCA-TTATGTAGTTGTGTG 2059 Query 1884 GCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGA 1923 | || || ||||| |||||| ||||||||| |||| || Sbjct 2060 GGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGA 2099 >seq4295 Length=67413 Score = 86.0 bits (94), Expect = 1e-13 Identities = 231/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 1586 AAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCT 1645 |||| |||| |||||||| ||| | ||| ||||||| | | || | || | || Sbjct 46936 AAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATTTATATCTTGTTCG 46877 Query 1646 AAAAACTCTTTATA-GCTTGCGTTGGGGCC--TGGATTGCAGAGGAAGATTGTTGGAATG 1702 | ||| ||||||| | | ||| | | ||||||| |||| | |||| ||| || Sbjct 46876 AGAAAAGCTTTATACGAACACTCTGGTGTCCTTGGATTGTAGAGCACGATTCATGGGATT 46817 Query 1703 CCTCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCC 1762 || |||||||||||| |||| || |||||||| | ||||| | ||| | |||||| Sbjct 46816 CCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCCAATTGTACTGGGCC 46757 Query 1763 CCCATGAATTCTTT---AAAGTGTTTCAGATAATGCG---GGTCAACATCATCTATAATG 1816 | |||| ||||| | | | |||| | ||| | | || |||||||||| | Sbjct 46756 ACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATACGTCATCTATAACG 46697 Query 1817 TTGAACCACGCATCGTTTGAATACACTTTAGGGCTTAGATCCAAG-TGCCCACATAAATA 1875 ||| |||| |||| || ||| | ||| | | | ||||| | ||||| || || Sbjct 46696 TTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATGAAGCCCA-TTATGTA 46638 Query 1876 ATTATGTGGCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAG 1922 |||||||| | || || || |||||| ||| || | |||||| Sbjct 46637 GTTATGTGGGCATAAAGACCGTGCCCATATTGTCTTTAAAATTCTAG 46591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654161218430