Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003556.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq3439 96.9 6e-17 seq5745 95.1 2e-16 seq3283 91.5 3e-15 seq33 89.7 9e-15 seq77518 86.0 1e-13 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 1857 GATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCG 1916 ||||||| || | ||| |||| || || ||||||||||||| ||| || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1917 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------TTAGAT 1970 |||| ||||| | | || || || | ||| | || | |||||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1971 AGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCTTCGGAC 2030 | | || |||||||| | |||||| |||||||| || || ||| | || | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 2031 TCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACATCGTTT 2090 | | ||||| | || || |||||| ||||| ||||| || | |||||| |||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 2091 TTCCT 2095 | ||| Sbjct 716 TCCCT 712 >seq5745 Length=45059 Score = 95.1 bits (104), Expect = 2e-16 Identities = 172/250 (69%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 1853 CCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1912 || |||||||| | | ||| ||| || |||||||||||||||| ||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1913 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT------ 1966 || | || ||||| | | ||| || || ||||| | || | |||| ||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1967 AGATAG--TGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCT 2024 | ||| ||| || | ||||||| |||||| |||||||||||||| || | | Sbjct 43661 AAATAAGCTGGAGGGATG--TCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 2025 TCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACA 2084 ||| | ||| ||||| | || || || ||||||||||| ||||| | ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 2085 TCGTTTTTCC 2094 ||||| || Sbjct 43779 CTGTTTTACC 43788 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 3e-15 Identities = 171/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1850 GGACCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCG 1909 || || |||||||| || | ||| |||| || || ||||||||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1910 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1964 ||||| | ||| ||||| | | || || || | ||| | || | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1965 -TTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATC 2023 ||| ||| | || || || || | |||||| |||||||| || || ||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 2024 TTCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCAC 2083 || | | | | ||||| | || || |||||| ||||| ||||| || | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 2084 ATCGTTTTTCCT 2095 ||||| ||| Sbjct 2043 GCTGTTTTCCCT 2032 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 170/249 (68%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 1853 CCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1912 || |||||||| || | ||| ||| || || | ||||||||||| ||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1913 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT------ 1966 || | || ||||||| | || | || | ||| | || | |||| ||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1967 AGATAG--TGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCT 2024 | ||| ||| || || ||||||| |||||| ||||| |||||||| ||| | Sbjct 403182 AAATAAGCTGGAGGG--ACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTC 403125 Query 2025 TCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACA 2084 ||| | ||| ||||| | || || ||| ||||||||||| ||||| | ||||| | Sbjct 403124 TCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAA 403065 Query 2085 TCGTTTTTC 2093 ||||||| Sbjct 403064 CTGTTTTTC 403056 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 170/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 1853 CCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1912 || |||||||| || | ||| ||| || || ||||||||||||| || || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1913 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT------ 1966 || | || || |||| | ||| || || | ||| | || | |||||||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1967 AGATAG--TGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCT 2024 | ||| ||| || |||||||||| |||||| ||||| |||||||| ||| | | Sbjct 2280 AAATAAGCTGGAGGG--ACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTT 2223 Query 2025 TCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACA 2084 || | ||| ||||| | || || || ||||||||||| ||| | | ||||| | Sbjct 2222 TCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAA 2163 Query 2085 TCGTTTTTCC 2094 ||||| || Sbjct 2162 CTGTTTTACC 2153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8730643708725