Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003609.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 91.5 3e-15 seq3439 87.8 3e-14 seq5745 86.0 1e-13 seq22495 82.4 1e-12 seq4295 78.8 2e-11 seq5493 77.0 6e-11 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1835 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCG 1894 || || |||||||| || | ||| |||| || || ||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1895 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1949 ||||| | ||| ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1950 -TTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCATGCCTCGTT 1998 ||| ||| | ||| ||||| || |||||||| |||||||| || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1842 GATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1901 ||||||| || | ||| |||| || || ||||||||||||| |||||| |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1902 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TTAGAT 1955 |||| ||||| | | || || || | ||||| || | | |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1956 AGTGGGGATCCACGTCATCAATGACGTTGTACCATGCCTCGTT 1998 | | ||| || ||||| |||||||| |||||||| || || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1838 CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAC 1897 || |||||||| | | ||| ||| || |||||||||||||||| |||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1898 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1951 || | || ||||| | | ||| || || ||||||| || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1952 AGATAGTGGGGATCCACGTCATCAATGACGTTGTACCATGCCTCGTT 1998 | ||| ||| | ||||||||||||||| |||||||| ||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1835 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCG 1894 || || |||||||| || | ||| || | || || | ||||||||||| |||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1895 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1949 ||||| | ||| ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1950 -TTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCATGCCTCGTT 1998 ||| ||| | ||| | |||||| |||||||| |||||||| || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 10/161 (6%) Strand=Plus/Minus Query 1840 TGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTT 1899 ||||||| |||| | |||| |||||| || |||||||||||| |||||| |||||||| Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1900 GGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTT------AG 1953 || || | ||| | |||||| | |||| |||||| | | ||| | Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1954 ATAG--TGGGGATCCACGTCATCAATGACGTTGTACCATGC 1992 |||| | | ||| |||||||| || |||||||||||||| Sbjct 46724 ATAGGATAGAGAT--ACGTCATCTATAACGTTGTACCATGC 46686 >seq5493 Length=32325 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/161 (73%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 1837 GCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTA 1896 || ||||||||| | | || || ||| |||| ||||||||||| |||||| ||||| Sbjct 31563 GCATGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTA 31504 Query 1897 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAG-TGCTTT--AG 1953 ||| || |||||||| ||| | || | | |||||| || | |||| || Sbjct 31503 CTTCACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAG 31444 Query 1954 ATA-GT-GGGGATCCACGTCATCAATGACGTTGTACCATGC 1992 ||| || || ||| ||||||||||||| |||||||||||| Sbjct 31443 ATATGTCGGTGAT--ACGTCATCAATGATGTTGTACCATGC 31405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270