Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003722.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq3283 127 4e-26 seq22495 116 6e-23 seq3439 111 3e-21 seq442 102 1e-18 seq953 100 5e-18 seq77518 93.3 7e-16 seq80468 91.5 3e-15 seq35612 89.7 9e-15 seq4104 89.7 9e-15 seq54129 87.8 3e-14 seq815 86.0 1e-13 seq30129 84.2 4e-13 seq5745 84.2 4e-13 seq3059 77.0 6e-11 >seq3283 Length=49157 Score = 127 bits (140), Expect = 4e-26 Identities = 230/332 (69%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | || || |||| |||| | || ||| ||| ||||||||| |||| Sbjct 2355 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 2296 Query 1667 TAGC-TAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTG 1725 ||| | || | ||||| |||||||| || | |||| | ||||| |||||||||||||| Sbjct 2295 TAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTG 2237 Query 1726 AACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTT 1785 |||||| ||||||||||| | |||| ||||| | || || || || | ||| | || Sbjct 2236 AACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTG 2177 Query 1786 AAAGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATC 1839 | | |||| ||| || | |||| ||||| || |||||||||||||| ||||| Sbjct 2176 ATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATC 2117 Query 1840 ATTATTGTACACCTTAGGGCTTAGATC--TAAATGACCACACAAGTAATTATGTGGTCCC 1897 ||| |||| || | | | ||| ||||| || | ||| || ||||| || Sbjct 2116 ATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCT 2059 Query 1898 AATGACCTGGCCCACATCGTCTTCCCTGTTCT 1929 ||||| | ||||| || |||||| |||| Sbjct 2058 AATGAACGAGCCCATGCTGTTTTCCCTATTCT 2027 >seq22495 Length=567 Score = 116 bits (128), Expect = 6e-23 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1608 CATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTAT 1667 |||| | ||||| |||| |||| | || ||| ||| ||| |||||| ||||| Sbjct 441 CATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAATGTTTTAT 382 Query 1668 AGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1727 || | | ||||| |||||||| || | |||| | |||| |||| ||||||||||| Sbjct 381 AGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAA 322 Query 1728 CTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAA 1787 |||| || |||||||| | |||| ||||||| | || || || | ||| | || | Sbjct 321 CTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGAC 262 Query 1788 AGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCAT 1841 | |||| ||| || | |||| | |||||| |||||||||||||| ||||||| Sbjct 261 AATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCAT 202 Query 1842 T 1842 | Sbjct 201 T 201 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 224/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | || || |||| |||| | || ||| ||| ||| ||||| |||| Sbjct 1035 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAACGTTTTA 976 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||| | | ||||| ||||||| || | |||| | ||||| ||||||||||||||| Sbjct 975 TAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 916 Query 1727 ACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTA 1786 ||||| || |||||||| | ||| ||||| | || || || || | ||| | || | Sbjct 915 ACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGA 856 Query 1787 AAGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCA 1840 | |||| ||| || | |||| || ||||| |||||||||||||| |||||| Sbjct 855 TAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCA 796 Query 1841 TTATTGTACACCTTAGGGCTTAGATC--TAAATGACCACACAAGTAATTATGTGGTCCCA 1898 || |||| || | | | ||| ||||| || | ||| || ||||| || | Sbjct 795 TTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTA 738 Query 1899 ATGACCTGGCCCACATCGTCTTCCCTGTTCT 1929 |||| | ||||| || |||||| |||| Sbjct 737 ATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq442 Length=237535 Score = 102 bits (112), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1609 ATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATA 1668 ||| | ||||| |||| |||| | || ||| ||| |||||||||| |||||| Sbjct 22708 ATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCCAAGAATGTTTTATA 22767 Query 1669 GCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAAC 1728 | | || ||||| |||||||| || |||| | ||||| |||||||||||||||| Sbjct 22768 GGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAAC 22827 Query 1729 TGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAA 1788 || || |||||||| | |||| ||| ||| || ||| || || | ||| | || | | Sbjct 22828 TGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATA 22887 Query 1789 GTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATT 1842 |||| ||| || | || | ||||| || || |||||||||| |||||||| Sbjct 22888 ATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCATCATT 22945 >seq953 Length=224861 Score = 100 bits (110), Expect = 5e-18 Identities = 223/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | ||||| |||| |||| | || ||| ||| ||| |||||| |||| Sbjct 1768 GCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAATGTTTTA 1827 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||| | | ||||| |||||||| | | |||| | ||||| ||||||||||||||| Sbjct 1828 TAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGA 1887 Query 1727 ACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTA 1786 | || || |||||||| | |||| ||||| | || || | || | ||| | || | Sbjct 1888 ATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGA 1947 Query 1787 AAGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCA 1840 | | || ||| || | |||| ||||| || || ||||||||||| |||||| Sbjct 1948 TAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCA 2007 Query 1841 TTATTGTACACCTTAGGGCTTAGATC--TAAATGACCACA-CAAGTAATTATGTGGTCCC 1897 || |||| || | | | ||| ||||| | || | ||| || ||||| || Sbjct 2008 TTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGGGCCT 2064 Query 1898 AATGACCTGGCCCACATCGTCTTCCCTGTTCT 1929 ||||| | ||||| || |||||| |||| Sbjct 2065 AATGAACGAGCCCATGCTGTTTTCCCTATTCT 2096 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 171/247 (69%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 1607 GCATTCTTTAAAGCCCA--ATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTT 1664 ||||| | ||||| ||| ||||| || || |||| ||| |||||||||| ||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATT--TGAATTTGAATCTAAATCCAAGAATGCTT 2421 Query 1665 TATA-GCTAGAGTTGGGTCCT--GGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAA 1721 |||| | || | ||| || |||||||| || | |||| ||||| |||||||||| Sbjct 2420 TATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAA 2361 Query 1722 TTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATT 1781 ||||||||| || ||||||| | ||| || |||| | ||| || || | ||| | Sbjct 2360 TTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACT 2301 Query 1782 CTTTAAAGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAG 1835 || | | |||| ||| || ||| || |||||||||||||||||||| | Sbjct 2300 GTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACG 2241 Query 1836 CATCATT 1842 | || || Sbjct 2240 CGTCGTT 2234 >seq80468 Length=4946 Score = 91.5 bits (100), Expect = 3e-15 Identities = 166/242 (69%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | ||||| |||| |||| | || ||| ||| || ||||||| |||| Sbjct 4194 GCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAATGTTTTA 4253 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||| | | ||||| ||||||| || | |||| | ||||||||||||||||| ||| Sbjct 4254 TAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGA 4313 Query 1727 ACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTA 1786 || || || |||||||| |||||| | ||| | | || || || | ||| | || | Sbjct 4314 ACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGT-GCTGTGCGCCTACGAACTGTTGA 4372 Query 1787 AAGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCA 1840 | |||| ||| || | | | ||||| | |||||||||||||| |||| | Sbjct 4373 TAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAA 4432 Query 1841 TT 1842 || Sbjct 4433 TT 4434 >seq35612 Length=1588 Score = 89.7 bits (98), Expect = 9e-15 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | || || |||| |||| | || ||| ||| |||||||||| |||| Sbjct 1435 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAATGTTTTA 1494 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||| | | ||||| |||||||| || | |||| | ||||| ||||||||||||||| Sbjct 1495 TAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGA 1554 Query 1727 ACTGGCTTCCCGTACTT 1743 ||||| || |||||||| Sbjct 1555 ACTGGTTTTCCGTACTT 1571 >seq4104 Length=64936 Score = 89.7 bits (98), Expect = 9e-15 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | || || |||| |||| | || ||| ||| ||||||||| |||| Sbjct 20902 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 20843 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||| | | |||||| |||||||| || | |||| | ||||| ||||||||||||||| Sbjct 20842 TAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 20783 Query 1727 ACTGGCTTCCCGTACTT 1743 ||||| || |||||||| Sbjct 20782 ACTGGTTTTCCGTACTT 20766 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1679 GGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1738 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1739 TACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1793 ||||| | |||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1794 -TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATT 1842 ||| || | |||| || || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq815 Length=151552 Score = 86.0 bits (94), Expect = 1e-13 Identities = 164/241 (68%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 1608 CATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTAT 1667 |||| | || || |||| |||| | || |||| ||| || ||| || ||||| Sbjct 85494 CATTTTGTAGAGTCCAAGTTTTCCAATATGAATTTGACTCCAAATTCAATAACGTTTTAT 85435 Query 1668 AGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1727 || | | | ||||| |||||||| || | ||| | ||||| ||||||||||||||| Sbjct 85434 AGG-ATAATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGAC 85376 Query 1728 CTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAA 1787 | || || ||||||| | |||| | ||||| | || || || | ||| | || | Sbjct 85375 CGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGAT 85316 Query 1788 AGTGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCAT 1841 | | || ||| || | | || ||||| || |||||||||||||| ||||||| Sbjct 85315 AATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCAT 85256 Query 1842 T 1842 | Sbjct 85255 T 85255 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1651 ATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAAT 1710 ||||||||| ||| ||| | | ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1711 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGC 1770 |||||||||||||||||| | || |||||||| | |||| ||||| | || || || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2462 Query 1771 CCCCATGAATTCTTTAAAGTGCTT 1794 || | ||| | || | | ||||| Sbjct 2463 GCCTACGAACTGTTGATAATGCTT 2486 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 171/247 (69%), Gaps = 13/247 (5%) Strand=Plus/Plus Query 1607 GCATTCTTTAAAGCCCA--ATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTT 1664 ||||| | ||||| | | |||| ||| || |||| ||| ||| ||||| ||| Sbjct 43463 GCATTTTGTAAAGTCAACGATTTCTAATT--TGAATTTGAATCTATATCTAAGAACGCTT 43520 Query 1665 TATA-GCTAGAGTTGGGTCCT--GGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAA 1721 |||| | || | ||| || |||||||| | | |||| ||||| || ||||||| Sbjct 43521 TATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAA 43580 Query 1722 TTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATT 1781 |||||||||| || |||||||| | ||| ||||| | | ||| || || ||||| | Sbjct 43581 TTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACT 43640 Query 1782 CTT--TAAAGTGCTTTAGGTA---GTGC-GGATCTACGTCATCAATGACGTTATACCAAG 1835 || ||| || |||| || || ||| | ||||||||||||||||||||| | Sbjct 43641 GTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATG 43700 Query 1836 CATCATT 1842 | || || Sbjct 43701 CGTCGTT 43707 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 129/187 (69%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1608 CATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTAT 1667 |||| | || || |||| |||| | || ||| ||| ||||||||| ||||| Sbjct 20490 CATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTAT 20431 Query 1668 AGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1727 | | | ||||| |||||||| || | |||| | ||||| |||||||||||||||| Sbjct 20430 CGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAA 20371 Query 1728 CTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAA 1787 ||| || ||||| || | |||| | ||||| | || || || | ||| | || | Sbjct 20370 TTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGAT 20311 Query 1788 AGTGCTT 1794 | ||||| Sbjct 20310 AATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8660555131410