Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003803.1 Length=2800 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq3439 93.3 7e-16 seq22495 91.5 3e-15 seq5745 80.6 5e-12 seq54129 78.8 2e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 1701 TCCAGAAACTCTTTATATGAT-GATGTCGGTCCTGGATTGCATAGGAAGATAGTGGGAAT 1759 |||| ||| |||||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1760 GCCGCCTTTAATTTGAATCGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCCCTTTGGGC 1819 |||||||||||||||| || ||||||||||| | |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1820 CCCCATGAATTCTTTGAAGTGCT------TGAGGTAATGGGGGTCGACGTCATCAATGAC 1873 || | ||| | || | |||| | | |||| || |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1874 GTTGTACCATGCGTCGTTGCTGTAAACCTTTGGACTGAGATCCAAATGTCCACATAAGTA 1933 ||| |||||||| || || ||| || | | | | ||||| | ||| || ||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1934 GTTGTGTGGTCCCAGAGATCGGGCCCACATCGTCTTCCCT 1973 ||||||||| || | || || ||||| || |||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 181/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 1712 TTTATATGATGATGTCGGTCCTGGATTGCATAGGAAGATAGTGGGAATGCCGCCTTTAAT 1771 |||||| ||| || ||||| ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1772 TTGAATCGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1831 ||||| || || |||||||| | ||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1832 TTTGAAGTGCT------TGAGGTAATGGGGGTCGACGTCATCAATGACGTTGTACCATGC 1885 || | |||| | | |||| || ||| ||||| |||||||| |||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1886 GTCGTTGCTGTAAACCTTTGGACTGAGATCCAAATGTCCACATAAGTAGTTGTGTGGTCC 1945 || || ||| || | | | | ||||| | ||| || |||||||||||| || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1946 CAGAGATCGGGCCCACATCGTCTTCCCT 1973 | || || ||||| || |||||| Sbjct 739 TAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1712 TTTATATGATGATGTCGGTCCTGGATTGCATAGGAAGATAGTGGGAATGCCGCCTTTAAT 1771 |||||| ||| | ||||| |||||||| || | |||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1772 TTGAATCGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1831 ||||| || || |||||||| | |||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1832 TTTGAAGTGCT------TGAGGTAATGGGGGTCGACGTCATCAATGACGTTGTACCATGC 1885 || | |||| | | |||| || || |||||| |||||||| |||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1886 GTCGTTGCTGTAAACCTTTGGACTGAGATCCAAATGTCCACATAAGTAGTTGTGTGGTCC 1945 || || ||| || | | | | ||||||| ||| || |||||||||||| || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/169 (71%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 1731 CCTGGATTGCATAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTAC 1790 || |||||||| | | |||| ||||| || ||||||||||||| || || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1791 TTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TGAAGTGCTTGAGGT 1848 || | ||| ||||| | | ||| || || ||||| | || | | || || | | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1849 AA------TGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1891 || ||| || || ||||||||||||||| |||||||||||||| Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCATAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 ||||| |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1788 TACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCT----- 1842 ||||| | |||| || |||| || || || | ||| | || | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1843 -TGAGGTAATGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1891 | | |||| || ||| || || |||||||| |||||| | || || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8839337185875