Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003828.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq3439 118 2e-23 seq3283 111 3e-21 seq953 91.5 3e-15 seq5745 89.7 9e-15 seq22495 84.2 4e-13 seq1993 80.6 5e-12 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 189/270 (70%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 1682 TTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAAT 1741 |||| | ||| ||| || || ||||||| || | |||| | ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1742 TTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTC 1801 ||||| || || || ||||||| |||| ||||||| || || || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1802 TTTAAAGTGTT------TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1855 || | | || | ||||||||| ||| ||| ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1856 ATTATTGCTGTATACTTTTTG--ACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGG 1913 || ||| || ||| ||||| | | | || | | || | || || |||||| Sbjct 799 ATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1914 CCTAATGAACGGGCCCACGTTGTCTTTCCT 1943 ||||||||||| ||||| | ||| || ||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 178/254 (70%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 1698 GGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCA 1757 || || |||||||| || | |||| | ||||| || ||||||||||||| || || || Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1758 TACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTT----- 1812 ||||||| ||| ||||||| || || || || | || | || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1813 -TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACT 1871 ||||||||| ||| |||||| || |||||||||||||| |||| ||| || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1872 TTTTG--ACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCC 1929 ||||| | | | || | | || | || || ||||||||||||||||| |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1930 ACGTTGTCTTTCCT 1943 | | ||| || ||| Sbjct 2045 ATGCTGTTTTCCCT 2032 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 185/270 (69%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 1682 TTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAAT 1741 |||| | ||| | | || || |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1742 TTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTC 1801 |||||| | || || ||||||| ||| ||||||| || || | || | || | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1802 TT--TAA-AGTGTT---TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1855 || ||| | | || ||||||||| ||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1856 ATTATTGCTGTATACTTTTT--GACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGG 1913 || ||| || ||| |||| | | | || | | | | || || |||||| Sbjct 2004 ATCATT--TGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGG 2061 Query 1914 CCTAATGAACGGGCCCACGTTGTCTTTCCT 1943 ||||||||||| ||||| | ||| || ||| Sbjct 2062 CCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 1701 CCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATAC 1760 || |||||||| | | |||| ||||| || ||||||||||||| || ||||| ||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1761 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTT------TT 1814 |||| || ||||||| | ||| || || || || | || | | |||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1815 AAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTT 1874 |||||| || || ||||||||||||||||||||| || | || ||| ||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1875 TGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCA 1930 | | | || | | ||| | |||||||||||| || || ||||| ||||| Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 170/251 (68%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 1682 TTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAAT 1741 |||| | ||| | | || || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1742 TTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTC 1801 ||||| || || || ||||||| ||| ||||| | | || || || | || | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1802 TTTAAAGTGTTT------TAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1855 || | | || || |||||||| ||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1856 ATTATTGCTGTATACTTTTTG--ACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGG 1913 || ||| || ||| ||||| | | | || | | || | || || |||||| Sbjct 206 ATCATT--TGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 1914 CCTAATGAACG 1924 ||||||||||| Sbjct 148 CCTAATGAACG 138 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 159/236 (67%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1701 CCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATAC 1760 || |||||||| || | |||| ||||| || |||||||||||| || ||||| ||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1761 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTT------TT 1814 |||| || ||||||| | ||| || | | || | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1815 AAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTT 1874 |||||| || |||||||||||||||||||||||| || || || ||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1875 TGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCA 1930 | | | || | | ||| | |||||||||||| || || ||||| | ||| Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8753021777550