Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003856.1 Length=2607 Score E Sequences producing significant alignments: (Bits) Value seq5745 118 2e-23 seq33 111 3e-21 seq77518 104 4e-19 seq4295 102 1e-18 seq1010 102 1e-18 seq1993 100 5e-18 seq3439 98.7 2e-17 seq54129 95.1 2e-16 seq22495 89.7 8e-15 seq3283 89.7 8e-15 seq35612 80.6 4e-12 seq490 80.6 4e-12 >seq5745 Length=45059 Score = 118 bits (130), Expect = 2e-23 Identities = 187/263 (71%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| | |||||| ||||||| || ||||||||||||||||| || || ||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATG--CTTTAATT 1673 || ||||||||||| | || || || || || | || |||| ||||||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1674 TCAAAT-AGCT--AGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGA 1730 |||| |||| |||| || ||||||||||||||||| | |||| ||||| || Sbjct 43661 --AAATAAGCTGGAGGGATG---TCATCAATGACGTTATACCATGCGTCGTTCGATTATG 43715 Query 1731 CCCTAGAATTGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCC 1790 | ||||| ||||||| | || | ||||||||| || || || | ||||| Sbjct 43716 TTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCC 43775 Query 1791 ACATTGTCTTGCCGGTTCTTGAA 1813 | | ||| || ||| |||| ||| Sbjct 43776 AAACTGTTTTACCGATTCTAGAA 43798 >seq33 Length=454124 Score = 111 bits (122), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| |||||||| ||||||| || | ||||||||||||||| ||||| ||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATG--CTTTAATT 1673 || ||||||||||||| ||| | || | || | || |||| ||||||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1674 TCAAAT-AGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACC 1732 |||| |||| || ||| ||||||||||||||||| |||| ||||| || Sbjct 403182 --AAATAAGCT-GGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 403126 Query 1733 CTAGAATTGAAATCCA 1748 || ||||| ||||||| Sbjct 403125 CTCGAATTCAAATCCA 403110 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| || ||||| ||||||| || |||||||||||||||| ||| | ||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGC--TTTAATT 1673 || |||||||| |||| || || || | || | || ||||| ||||||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1674 TCAAAT-AGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACC 1732 |||| |||| || ||||||||||||||||||||| |||| ||||| || Sbjct 2280 --AAATAAGCT-GGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1733 CTAGAATTGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCAC 1792 | |||| ||||||| | || | ||||||||| || || | | |||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAA 2164 Query 1793 ATTGTCTTGCCGGTTCT 1809 | ||| || ||| |||| Sbjct 2163 ACTGTTTTACCGATTCT 2147 >seq4295 Length=67413 Score = 102 bits (112), Expect = 1e-18 Identities = 172/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1559 GGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTA 1618 |||||| | ||||||||| |||| || ||||||||||||||| |||| || || ||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1619 CAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTCAAA 1678 ||||| | ||| | | ||||||| |||| | ||||| |||| ||| | |||| Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1679 TA-GCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCTAGA 1737 || | ||| | | || ||||| || ||||| || | | | ||||||| | | || Sbjct 46723 TAGGATAGAGAT-ACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1738 ATTGAAATCCA-GATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACATTG 1796 ||| ||||||| || | || | || ||||| | ||| || | |||||| |||| Sbjct 46664 ATTAAAATCCATGAAG-CCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1797 TCTT 1800 |||| Sbjct 46605 TCTT 46602 >seq1010 Length=204159 Score = 102 bits (112), Expect = 1e-18 Identities = 198/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 1560 GATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTAC 1619 ||||||| |||||||| || | || | |||||||||| |||||| || || |||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1620 AGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTT-CAAA 1678 ||||| ||||| | | |||| ||| ||| | ||||||||||| ||| ||| |||| Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1679 TA-GCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCTAGA 1737 || | ||| | || ||||| || || ||||| | | | ||||||| | | || Sbjct 40794 TAGGATAGAG-ACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGA 40736 Query 1738 ATTGAAATCCA-GATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACATTG 1796 ||| ||||| | || | || | || ||||| ||||| |||| | |||| |||| Sbjct 40735 ATTAAAATCTATGAAG-CCCATTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATTG 40677 Query 1797 TCTTGCCGGTTCTTGAATCACCTTCGACGATGATACTAATAGGTCT 1842 |||| || |||| | |||||| | ||| ||| |||| || Sbjct 40676 TCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 Score = 98.7 bits (108), Expect = 2e-17 Identities = 199/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 || |||||||| |||||||| |||| || || |||||||||||||| | || || ||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1616 TT-ACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTT 1674 || ||| | ||| ||||| | | || ||||| ||| | |||||||||| ||| || Sbjct 36544 TTGACA-TGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTTTTTTG 36600 Query 1675 CAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCT 1734 ||||||| | |||||||| |||| ||||| | | | | ||||| | | Sbjct 36601 CAAATAGGATCGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGATTT 36660 Query 1735 AGAATTGAAATCCA-GATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACA 1793 ||||| ||||||| || | || | || ||| | ||||| |||| |||||| | Sbjct 36661 CGAATTAAAATCCATGAAG-CCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCCCATA 36719 Query 1794 TTGTCTTGCCGGTTCTTGAATCACCTTCGACGATGATACTAATAGGTCT 1842 ||||||| || |||| | ||||| | |||| ||| |||| || Sbjct 36720 TTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACTCTTAGGCCT 36768 >seq1993 Length=81530 Score = 100 bits (110), Expect = 5e-18 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 1553 TCACCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCA 1612 || ||||||||||| |||||||| ||||||| || |||||||||||||||| || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1613 TACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATG--CTTTA 1670 ||||| ||||||||||| | || || | | || | || |||| |||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1671 ATTTCAAAT-AGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAG 1729 ||| |||| |||| || ||| ||||||||||||||||| ||| ||||| || Sbjct 74286 ATT--AAATAAGCT-GGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1730 ACCCTAGAATTGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCC 1789 | ||||| ||||||| | || | ||||||||| || || || | || | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1790 CACATTGTCTTGCCGGTTCTTGAATCACCTTC 1821 || | ||| || ||| |||| ||| ||||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||| ||||||| || ||||| |||||| || ||||||||||||||||| ||||| ||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTT--TAATT 1673 || ||| | ||||| | | ||| || || | || | || ||||||| ||||| Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 841 Query 1674 TCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCC 1733 ||||| | || ||||||||| ||||||||||| | | ||||| || || Sbjct 840 --AAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1734 TAGAATTGAAATCCA 1748 | ||||| ||||||| Sbjct 782 TGGAATTAAAATCCA 768 >seq54129 Length=2260 Score = 95.1 bits (104), Expect = 2e-16 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| || ||||| |||||| || ||||||||||||| ||| ||||| ||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTT--TAATT 1673 || || | ||| |||| | ||| || || | || | || ||||||| ||||| Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1674 TCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATA 1728 ||||| | || |||||| || ||||||||||| ||| ||||| || || Sbjct 2137 --AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| || ||||| | |||| || | ||||||||||||||| ||||| ||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTT--TAATT 1673 || || | |||||||| ||| || || | || | || |||||||| ||||| Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1674 TCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCC 1733 ||||| | || || ||||| ||||||||||| | | ||||| || || Sbjct 247 --AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 190 Query 1734 TAGAATTGAAATCCA 1748 | ||||| ||||||| Sbjct 189 TGGAATTAAAATCCA 175 >seq3283 Length=49157 Score = 89.7 bits (98), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| || ||||| |||||| || ||||||||||||||||| || || ||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTT--TAATT 1673 || || | |||||| | | ||| || || | || | || ||||||| ||||| Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1674 TCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCC 1733 ||||| | || ||| || || ||||||||||| | | ||||| || || Sbjct 2160 --AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1734 TAGAATTGAAATCCA 1748 | ||||| ||||||| Sbjct 2102 TGGAATTAAAATCCA 2088 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 4e-12 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 ||||||||||| || ||||| ||||||||| ||||||||||||||||| ||||| ||| Sbjct 1510 CCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTAC 1569 Query 1616 TTACAGTTTGACTGCCA 1632 || ||| | |||||| Sbjct 1570 TTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 1561 ATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACA 1620 ||||||||| || |||||||| || || ||||||||||| | |||||| |||| || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1621 GTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTCAAATA 1680 | | |||||| | || ||||||||| | || |||||||||| || || | | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT--CTTCCAGAGA 70501 Query 1681 GCT--AGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCTAGAA 1738 | | || ||| ||||| ||||||||||| | ||||| ||| | | | | Sbjct 70500 GATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTA 70441 Query 1739 TTGAAATCCA 1748 |||||||||| Sbjct 70440 TTGAAATCCA 70431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8225769048770