Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003861.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 109 1e-20 seq22495 104 4e-19 seq5745 98.7 2e-17 seq33 93.3 7e-16 seq77518 87.8 3e-14 seq442 87.8 3e-14 seq35612 86.0 1e-13 seq1993 86.0 1e-13 seq953 86.0 1e-13 seq54129 82.4 1e-12 seq5493 82.4 1e-12 seq20728 80.6 5e-12 seq4104 78.8 2e-11 seq815 78.8 2e-11 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 177/252 (70%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCG 1742 || ||||||||||| || | |||| | || || || |||||||||||||||||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1743 TACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1797 ||||| | || | |||||| | | || || || | ||| | | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1798 -TTAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATTGCTGTAAACC 1856 ||| ||||| |||| ||||| || || ||||| |||||||||||||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1857 CTAGGACTCAAGTCCAGATGTCCACACAGATAGTTGTGTGGACCCAATGACCTAGCCCAC 1916 | | | | || |||| | ||| | ||||||||||| || ||||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1917 ATCGTTTTGCCT 1928 ||||| ||| Sbjct 2043 GCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCG 1742 || ||| ||||||| || | |||| | || || || |||||||||||||||||||| ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1743 TACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1797 ||||| | ||| | ||||| | | || || || | ||| | | | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1798 -TTAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATTGCTGTAAACC 1856 ||| ||||| |||| || ||||| || ||||| |||||||||||||| ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1857 CTAGGACTCAAGTCCAGATGTCCACACAGATAGTTGTGTGGACCCAATGACCTAGCCCAC 1916 | | | | || |||| | ||| | ||||||||||| || ||||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 724 Query 1917 ATCGTTTTGCCT 1928 ||||| ||| Sbjct 723 GCTGTTTTCCCT 712 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1661 GAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCC 1720 |||| ||||||| ||| || ||||||||||| || | |||| | | || || | Sbjct 392 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCA 333 Query 1721 TTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCAT 1780 |||||||||||||||||| |||||||| | || | |||||||| | || || || | Sbjct 332 TTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTAC 273 Query 1781 GAATTCCTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATTACGTTGTA 1834 ||| | | | | |||| ||| ||||| |||| | |||||| || ||||| || Sbjct 272 GAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATA 213 Query 1835 CCATGCATCATT 1846 |||||||||||| Sbjct 212 CCATGCATCATT 201 >seq5745 Length=45059 Score = 98.7 bits (108), Expect = 2e-17 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1685 CCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTA 1744 |||||||||||| | | |||| || || || |||||||||||||||||||| ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1745 CTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1798 ||| | ||||||||||| | | ||| || || ||||| | | | | || | | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1799 TAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATTGCTGTAAACCCT 1858 || |||| ||| | ||||||||| ||||| |||||||| || || || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1859 AGGACTCAAGTCCAGATGTCCACACAGATAGTTGTGTGGACCCAATGACCTAGCCCACAT 1918 | | |||| |||| | || | ||| || ||||||||||| || | ||||| | Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1919 CGTTTTGCC 1927 ||||| || Sbjct 43780 TGTTTTACC 43788 >seq33 Length=454124 Score = 93.3 bits (102), Expect = 7e-16 Identities = 168/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1685 CCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTA 1744 |||||||||||| || | |||| || || || | |||||||||||||||||| ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1745 CTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1798 ||| | ||||||||||||| | || | || | ||| | | | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1799 TAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATTGCTGTAAACCCT 1858 || |||| ||| ||||||||||| ||||| ||||| || || || ||| || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1859 AGGACTCAAGTCCAGATGTCCACACAGATAGTTGTGTGGACCCAATGACCTAGCCCACAT 1918 | | |||| |||| | || | || || ||||||||||| || | ||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1919 CGTTTT 1924 ||||| Sbjct 403063 TGTTTT 403058 >seq77518 Length=14724 Score = 87.8 bits (96), Expect = 3e-14 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1685 CCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTA 1744 |||||||||||| || | |||| || || || |||||||||||||||| ||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1745 CTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1798 ||| | |||||||| |||| | ||| || || | ||| | | | | |||| | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1799 TAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATT 1846 || |||| ||| || |||||||| ||||| ||||| || || || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq442 Length=237535 Score = 87.8 bits (96), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 1661 GAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCC 1720 |||| ||||||| |||| || ||||||||||| || |||| | || || | || Sbjct 22756 GAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCC 22815 Query 1721 TTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCAT 1780 |||||||||||||| ||| |||||||| | || | |||| ||| | ||| || || | Sbjct 22816 TTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTAC 22875 Query 1781 GAATTCCTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATTACGTTGTA 1834 ||| | | | | |||| ||| ||||| || | ||||| || || ||||| || Sbjct 22876 GAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATA 22934 Query 1835 CCATGCATCATT 1846 || ||||||||| Sbjct 22935 CC-TGCATCATT 22945 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1661 GAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCC 1720 |||| ||||||| ||| || ||||||||||| || | |||| | || || || || Sbjct 1485 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCC 1544 Query 1721 TTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCA 1762 |||||||||||||||||| |||||||| | ||| | |||||| Sbjct 1545 TTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1685 CCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTA 1744 |||||||||||| || | |||| || || || ||||||||||||||||||| ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1745 CTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1798 ||| | ||||||||||| | | ||| || | | ||| | | | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1799 TAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGC 1840 || |||| ||| ||||||||||| ||||| ||||| || Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 183/274 (67%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 1661 GAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCC 1720 |||| ||||||| ||| || ||||||||||| | | |||| | || || || || Sbjct 1818 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCC 1877 Query 1721 TTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCAT 1780 ||||||||||| || ||| |||||||| | || |||||| | | || | || | Sbjct 1878 TTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTAC 1937 Query 1781 GAATTCCTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATTACGTTGTA 1834 ||| | | | | | || ||| ||||| |||| ||||| || || ||||| || Sbjct 1938 GAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATA 1997 Query 1835 CCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGTCCACACAGATAGTTGTG 1894 |||||||||||| ||| | | | | || |||| | || | |||||||| Sbjct 1998 CCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTG 2057 Query 1895 TGGACCCAATGACCTAGCCCACATCGTTTTGCCT 1928 ||| || ||||| | |||||| ||||| ||| Sbjct 2058 TGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCG 1742 || ||||||||||| || | |||| | || || || ||||||||||||| |||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1797 ||||| | || | ||| |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATT 1846 ||| ||||| |||| || || || || ||||| |||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5493 Length=32325 Score = 82.4 bits (90), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 1689 GGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTACTTG 1748 |||||||||| | ||| | |||||| | |||||||||||||||||| |||||||| Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1749 GTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAG-TGCTTT--AGATAA 1805 ||||| ||||||| ||| | || | | || || || | |||| ||||| Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATAT 31440 Query 1806 TGCGGATCTACGTCATCAATTACGTTGTACCATGCA 1841 ||| |||||||||||| | ||||||||||||| Sbjct 31439 GTCGGTGATACGTCATCAATGATGTTGTACCATGCA 31404 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1710 GGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCAGTCCCTT 1769 || || |||||||||||||||| |||||| |||||||| | || | ||||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1770 TGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCA 1823 || || || | ||| | | | | |||| ||| ||||| |||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1824 ATTACGTTGTACCATGCATCATT 1846 || ||||| || ||||||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1667 TTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAAT 1726 ||||||| ||| ||| ||||||||||| || | |||| | || || || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1727 TTGAACTGGTTTCCCGTACTT 1747 |||||||||||| |||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTT 20766 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCACAGGAAGATAGTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCG 1742 || ||||||||||| || | ||| | || || || |||||||||||| | ||||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1743 TACTTGGTGTTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1797 ||||| | || | || ||||| | || || || | ||| | | | | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1798 -TTAGATAATGCGGATCTACGTCATCAATTACGTTGTACCATGCATCATT 1846 ||| ||||| | || ||||| || || ||||| |||||||||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8698918609290