Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003866.1 Length=2583 Score E Sequences producing significant alignments: (Bits) Value seq1010 125 1e-25 seq4295 122 1e-24 seq5745 118 2e-23 seq5493 109 9e-21 seq1993 109 9e-21 seq490 102 1e-18 seq22495 89.7 8e-15 seq3439 87.8 3e-14 seq3283 87.8 3e-14 seq33 87.8 3e-14 seq77518 86.0 1e-13 >seq1010 Length=204159 Score = 125 bits (138), Expect = 1e-25 Identities = 205/291 (70%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 1697 CCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1756 ||| ||||||| |||||||| | | || | ||||||||| |||||| || |||||| Sbjct 40918 CCTAGATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTAC 40859 Query 1757 TTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTT 1816 ||| ||||||||||| | ||| ||| ||| ||||||||||| || ||| ||| Sbjct 40858 TTAGCATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT--TTTT 40801 Query 1817 AGATAATGCG---GAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACC 1873 | ||| | ||| | |||||| || || |||||| |||||||| ||||| Sbjct 40800 TGCAAATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGAT 40741 Query 1874 TTTGAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCA 1932 ||||||||||| || | | ||||| | | || |||||||| ||||||| || |||| Sbjct 40740 TTTGAATTAAAATCTATGAAGCCCA-TTATGTAGTTATGTGGGCCTAAAGATCGTTCCCA 40682 Query 1933 CATGGTCTTGCCGGTTCGTGAATCACCTTCAACTATGATACTAATAGGTCT 1983 || ||||| || ||| | |||||| | |||| ||| |||| || Sbjct 40681 TATTGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 Score = 109 bits (120), Expect = 9e-21 Identities = 204/292 (70%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 1697 CCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1756 ||||||||||| |||||||| | || || | |||||||||||||| | || |||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1757 TT-ACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTT 1815 || ||| | ||||||||| | | ||||| ||| ||||||||||| | ||| || Sbjct 36544 TTGACA-TGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTT---TT 36597 Query 1816 TAGATAATGCG---GAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGAC 1872 | | ||| | ||| | ||||| |||| |||||| |||||| | ||||| Sbjct 36598 TTGCAAATAGGATCGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGA 36657 Query 1873 CTTTGAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCC 1931 || |||||||| || | | ||||| | | || ||| |||| ||||||| || |||| Sbjct 36658 TTTCGAATTAAAATCCATGAAGCCCA-TTATGTAGTTACGTGGGCCTAAAGATCGTGCCC 36716 Query 1932 ACATGGTCTTGCCGGTTCGTGAATCACCTTCAACTATGATACTAATAGGTCT 1983 | || ||||| || ||| | ||||| | ||||| ||| |||| || Sbjct 36717 ATATTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACTCTTAGGCCT 36768 >seq4295 Length=67413 Score = 122 bits (134), Expect = 1e-24 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1699 TGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTT 1758 ||||||| | ||||||||| | || || || |||||||||||| |||| || |||||||| Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1759 ACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTTAG 1818 ||||| | ||| | |||||| |||| |||||||| || | ||| || | Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1819 ATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTTGA 1878 ||| ||| || |||||| || ||||| ||| |||||||| ||||| || || Sbjct 46724 ATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1879 ATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCACATGG 1937 |||||| || | | ||||| | | || |||||||| | ||||| || ||||| || | Sbjct 46664 ATTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1938 TCTT 1941 |||| Sbjct 46605 TCTT 46602 >seq5745 Length=45059 Score = 118 bits (130), Expect = 2e-23 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 1697 CCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1756 || |||||||| | |||||| | || || |||||||||||||||||||| ||||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1757 TTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTT 1816 || ||||| ||||| | | ||| || || || | || || | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1817 AGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTT 1876 | |||| |||| ||||||||||||||||||||| || | || || | || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1877 GAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCACAT 1935 ||||| || || | ||||| | | |||||||||||| || || | ||| ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1936 GGTCTTGCCGGTTC 1949 || || ||| ||| Sbjct 43780 TGTTTTACCGATTC 43793 >seq5493 Length=32325 Score = 109 bits (120), Expect = 9e-21 Identities = 143/191 (75%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 1699 TGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTT 1758 ||||||||||| ||| || | | || |||| ||||||||||||||| || |||||||| Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTT 31501 Query 1759 -ACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAG-TGCTTTAGCTTT 1816 ||| ||||||||||||| ||| | || || |||||||||||| | |||| || Sbjct 31500 CACA-TTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC--- 31446 Query 1817 AGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTT 1876 ||||| ||| | || ||||||||||| ||| ||| ||| ||| |||| | || Sbjct 31445 AGATATGTCGGTGATACGTCATCAATGATGTTGTACCATGCACGATTAGAAATG-TTTTC 31387 Query 1877 GAATTAAAGTC 1887 |||||| |||| Sbjct 31386 GAATTACAGTC 31376 >seq1993 Length=81530 Score = 109 bits (120), Expect = 9e-21 Identities = 189/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 1694 TCTCCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCG 1753 || || |||||||| |||||||| | || || || |||||||||||||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1754 TACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGC 1813 ||||| ||||| ||||| | | ||| || | | | || || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1814 TTTAGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACC 1873 ||| |||| |||| | ||||||||||||||||||| ||| || || || | Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1874 TTTGAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCA 1932 || ||||| || || | ||||| | | |||||||||||| || || | ||| | ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1933 CATGGTCTTGCCGGTTCGTGAATCACCTTCAA 1964 | || || ||| ||| ||| ||||||| Sbjct 74167 AACTGTTTTACCGATTCTAGAAGGTCCTTCAA 74136 >seq490 Length=137872 Score = 102 bits (112), Expect = 1e-18 Identities = 164/227 (72%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 1702 ATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTACA 1761 |||||| || || ||||| ||||| |||||||||||||| | |||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1762 GTTTGATTGCCAGTCCCTTTG---GGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTT-TA 1817 | | ||||||| || || ||||||||||||||| |||| ||||| ||| | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT---CTTCCA 70505 Query 1818 GATA-ATGC-GGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTT 1875 || | |||| |||| | |||||| |||||||||||| | | ||| ||||| ||| Sbjct 70504 GAGAGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTT 70445 Query 1876 TGAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAA 1921 | ||| || || | ||||| | || ||||||||||| || ||| Sbjct 70444 TCTATTGAAATCCATAACGCCCA-TAAAGTAATTATGTGGACCCAAA 70399 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 8e-15 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 1696 TCCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTA 1755 ||| |||||||| || ||||| | || || | ||||||||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1756 CTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTT 1815 ||| || | ||||||| | || || || | | || || || ||||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1816 TAGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTT 1875 || ||||| ||||| |||||||| |||||||||||| |||| |||||| | || Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1876 TGAATTAAAGTC 1887 |||||||| || Sbjct 188 GGAATTAAAATC 177 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 191/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 1701 GATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTAC 1760 ||||||| || ||||| || || || ||||||||||||||||| || |||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1761 AGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTTAGAT 1820 ||| | ||||| | | || || || | | || || | ||||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1821 AATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTTGAAT 1880 ||| ||||| | ||||| |||||||||||| |||| |||||| | || |||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1881 TAAAGTCGAGGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCACATGGTCT 1940 |||| || | || | | || || ||||| ||||| | ||| ||||| || | Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1941 TGCCGGTTCGTGAATCACCTTCAACTATGATACTAATAGGTCTTTC 1986 | || ||| ||| ||||||| || || || || || | ||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTC 671 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 194/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 1696 TCCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTA 1755 ||| |||||||| || ||||| || || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1756 CTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTT 1815 ||| || | ||||| | | || || || | | || || | ||||| | Sbjct 2221 CTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1816 TAGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTT 1875 || ||||| ||||| | ||| || |||||||||||| |||| |||||| | || Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1876 TGAATTAAAGTCGAGGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCACAT 1935 |||||||| || | || | | || || ||||| ||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1936 GGTCTTGCCGGTTCGTGAATCACCTTCAACTATGATACTAATAGGTCTTTC 1986 || || || ||| ||| ||||||| || || || || || | ||| Sbjct 2041 TGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTC 1991 >seq33 Length=454124 Score = 87.8 bits (96), Expect = 3e-14 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1697 CCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1756 || |||||||| |||||||| | || || || | ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1757 TTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTT 1816 || ||||| ||||||| | || | || | | || || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1817 AGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTT 1876 | |||| |||| | ||||||||||||||||||| ||| | || || | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1877 GAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCA 1932 ||||| || || | ||||| | | ||||||||||| || || | ||| ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 173/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 1697 CCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1756 || |||||||| || ||||| | || || || |||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1757 TTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTT 1816 || ||||| || |||| | ||| || || | | || || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1817 AGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCTTT 1876 | |||| |||| | |||||||||||||||||| ||| | || || | || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1877 GAATTAAAGTCGA-GGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCACAT 1935 |||| || || | ||||| | | |||||||||||| || || ||| ||||| | Sbjct 2220 AAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1936 GGTCTTGCCGGTTC 1949 || || ||| ||| Sbjct 2161 TGTTTTACCGATTC 2148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8149042093010