Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003897.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq77518 93.3 7e-16 seq3283 87.8 3e-14 seq22495 84.2 4e-13 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 172/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 1617 GCATTCTTTATAGCCCA-GTTTTTTAGTTTAGAATTCTTTTCTTCATCCAAGAATTCTTT 1675 ||||| | || || ||| | |||| | ||| ||||| ||| |||||||||| |||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTT-GAATTTGAATCTAAATCCAAGAATGCTTT 2420 Query 1676 ATA-GCTGGAGTTGGGTCCT--GGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAAT 1732 ||| | | | ||| || |||||||| || | ||| ||||| ||||||||||| Sbjct 2419 ATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAAT 2360 Query 1733 TTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1792 |||||||| || | ||||||| |||||| || |||| | ||| || || | ||| | Sbjct 2359 TTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTG 2300 Query 1793 CTTAAAGTGCTTT-------AGGTAGTTGGGGTCTACGTCATCAATTACGTTATACCACG 1845 | | | |||||| | || ||| | || |||||||| ||||||||||||| Sbjct 2299 TTGATAATGCTTTTTAATTAAATAAGCTGGAG-GGACATCATCAATGACGTTATACCACG 2241 Query 1846 CATCATT 1852 | || || Sbjct 2240 CGTCGTT 2234 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1661 ATCCAAGAATTCTTTATAGC-TGGAGTTGGGTCCTGGATTGCAGAGGAAGATTGTGGGAA 1719 ||||||||| ||||||| | || | ||||| |||||||| || | ||| | |||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAA 2253 Query 1720 TTCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGG 1779 | |||||||||||||||||||| || ||||||| ||| | ||||| | | || | Sbjct 2252 TCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTG 2193 Query 1780 CCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCAATTA 1833 | || | ||| | | | | |||| ||| || || || ||||| || || | Sbjct 2192 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1834 CGTTATACCACGCATCATT 1852 |||||||||| |||||||| Sbjct 2132 CGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 137/198 (69%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1661 ATCCAAGAATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1720 ||| |||||| ||||||| | | ||||| |||||||| || | ||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1721 TCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGC 1780 |||| ||||||||||||||| || ||||||| ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1781 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCAATTAC 1834 || | ||| | | | | |||| ||| || || || | |||||| || || Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1835 GTTATACCACGCATCATT 1852 ||||||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711706435250