Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_003898.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3439 100 5e-18 seq3283 95.1 2e-16 seq5745 89.7 9e-15 seq22495 86.0 1e-13 seq490 77.0 6e-11 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1655 TCTAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATTGTTGGGATA 1714 |||||| || |||||| ||| || || || |||||||||| | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGGGCC 1774 || ||||||||||||| |||||| ||||| || | || | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1775 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACG 1828 || | ||| | || | | |||| ||| ||| | ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1829 TTGTACCATGCCTCATT 1845 || |||||||| ||||| Sbjct 810 TTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 1655 TCTAAGTACTCTTTATATGAT-GATGTTGGCCCTGGATTGCAAAGGAAGATTGTTGGGAT 1713 || ||| || |||||| ||| ||| || || ||||||||||| | ||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1714 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGGGC 1773 || ||||||||||||| |||||||||||| || | | | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1774 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGAC 1827 || | ||| | || | | |||| ||| ||| | ||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1828 GTTGTACCATGCCTCATT 1845 ||| |||||||| ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/200 (70%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1655 TCTAAGTACTCTTTATATGATGATGTTGG---CCCTGGATTGCAAAGGAAGATTGTTGGG 1711 |||||| || ||||||| ||| | ||| ||| |||||||||| | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1712 ATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGG 1771 || |||||||||||||||| |||||| ||||| || | | ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1772 GCCCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATG 1825 || || ||||| | || | | || | ||| ||| ||| || |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1826 ACGTTGTACCATGCCTCATT 1845 ||||| |||||||| || || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1655 TCTAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATTGTTGGGATA 1714 |||||| | |||||| ||| | || || ||||||||||| | ||| || | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGGGCC 1774 || | ||||||||||| |||||| ||||| || | | | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1775 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACG 1828 || | ||| | || | | |||| ||| ||| | ||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1829 TTGTACCATGCCTCATT 1845 || |||||||| ||||| Sbjct 217 TTATACCATGCATCATT 201 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 6e-11 Identities = 119/166 (72%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 1690 ATTGCAAAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGT 1749 |||||| |||| |||| ||| || |||||||||||||| ||||| || | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1750 GTCGCTTTGCCAGTCCCTTTG---GGCCCCCATGAATTCTTTAAAGTGCTT----TAGAT 1802 || ||||||| || || |||||| || | || | | ||||| ||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1803 AG-TG-GGGATCGACGTCATCAATGACGTTGTACCATGCCTCATTG 1846 || || ||| ||||||||| |||||||| ||||||| ||||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTG 70456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8647767305450