Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004005.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 8e-22 seq3439 109 1e-20 seq22495 96.9 6e-17 seq54129 91.5 3e-15 seq953 84.2 4e-13 seq815 84.2 4e-13 seq20728 78.8 2e-11 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| |||||||| || | |||| | ||||| || ||||||||||||| || ||||| Sbjct 2284 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCC 2225 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 |||||||| ||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 2224 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 2166 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1880 ||||||||| ||| ||||| || |||||||| ||||| |||||||| |||| Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC- 2107 Query 1881 CCTTTGGGCTT-AGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCC 1939 ||||| || | || | | ||| || || || |||||||||| || | ||| Sbjct 2106 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1940 CACATTGTTTTGCCTGTTCT 1959 || |||||| ||| |||| Sbjct 2046 CATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| ||||||| || | |||| | ||||| || ||||||||||||| || || || Sbjct 964 AGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 905 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 |||||||| |||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 904 GTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 846 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1880 ||||||||| ||| || ||||| |||||||| ||||| |||||||| |||| Sbjct 845 TAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC- 787 Query 1881 CCTTTGGGCTT-AGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCC 1939 ||||| || | || | | ||| || || || |||||||||| || | ||| Sbjct 786 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 727 Query 1940 CACATTGTTTTGCCTGTTCT 1959 || |||||| ||| |||| Sbjct 726 CATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 126/172 (73%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| |||||||| || | |||| | |||| || | ||||||||||| || || || Sbjct 371 AGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCC 312 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 |||||||| ||| ||||||| | ||| || || | ||| | |||| | |||| Sbjct 311 GTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCT 253 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1872 ||||||||| ||| | |||||| |||||||| ||||| |||||||| Sbjct 252 TAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq54129 Length=2260 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1709 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCG 1768 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1769 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCT----- 1823 ||||||| ||| || |||| ||| || || | ||| | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1824 -TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1872 ||||||||| ||| || || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| |||||||| | | |||| | ||||| || |||||||||||||| | || || Sbjct 1839 AGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCC 1898 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 |||||||| ||| ||||| | | ||| | || | ||| | |||| | | || Sbjct 1899 GTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT-GTTGATAATACTTTT 1957 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1872 ||||||||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 1958 TAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || | Sbjct 85425 AGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTC 85366 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 |||||||| ||| | ||||| | ||| || || | ||| | |||| | | || Sbjct 85365 GTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACT-ATTGATAATACTTCT 85307 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1872 ||||||||| | | ||||| || |||||||| ||||| |||||||| Sbjct 85306 AAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 9/144 (6%) Strand=Plus/Plus Query 1736 GGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTC 1795 ||||| |||||||||||||||| || || |||||||||| ||| |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1796 TGGGCCCCCATGAATTCCTTGA-AGTGCT------TTAAATAATGCGGGTCTACGTCATC 1848 || || || | ||| | |||| | |||| ||||||||| ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACT-GTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1849 AATGACGTTGTACCACGCATCATT 1872 |||||||| || || |||||||| Sbjct 1560 GATGACGTTATATCATGCATCATT 1583 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 1708 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1767 |||||| |||||||| || | |||| | ||||| || |||||||||||||| || || || Sbjct 20420 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCC 20361 Query 1768 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1823 ||| |||| ||| | ||||| | ||| || || | ||| | |||| | |||| Sbjct 20360 GTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 20302 Query 1824 ---TTAAATAATGCGGGTCTACGTCATCAATG 1852 ||||||||| ||| ||||| |||||| Sbjct 20301 TAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8778596713350