Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004044.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq3283 122 2e-24 seq3439 118 2e-23 seq22495 116 6e-23 seq953 91.5 3e-15 seq54129 87.8 3e-14 seq4104 87.8 3e-14 seq442 86.0 1e-13 seq35612 84.2 4e-13 seq33 84.2 4e-13 seq5745 82.4 1e-12 seq3059 82.4 1e-12 seq815 82.4 1e-12 seq30129 78.8 2e-11 seq77518 77.0 6e-11 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| |||||||| || | |||| | || |||||||||||||||||||||||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1792 ||||| | ||| ||||| | | || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1793 -TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACC 1851 ||| ||||| |||| ||||| || |||||||| |||| |||||||| |||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1852 TTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCAC 1911 || | | | | ||||| | || | ||| || ||||| |||||||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1912 ATCGTCTTCCCCGTTCT 1928 || ||||| |||| Sbjct 2043 GCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| ||||||| || | |||| | || |||||||||||||||||||||||||| ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1792 ||||| | |||| ||||| | | || || || | ||| | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1793 -TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACC 1851 ||| ||||| |||| || ||||| |||||||| |||| |||||||| |||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1852 TTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCAC 1911 || | | | | ||||| | || | ||| || ||||| |||||||| | ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 724 Query 1912 ATCGTCTTCCCCGTTCT 1928 || ||||| |||| Sbjct 723 GCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 116 bits (128), Expect = 6e-23 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1662 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAAT 1721 ||||||| ||| ||||| |||||||| || | |||| | | ||||||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1722 TTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1781 |||||||||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1782 TTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGC 1835 || | | |||| ||| ||||| |||| | |||||| |||||||| |||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1836 ATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCC 1895 |||||| |||| || | | | | ||||||| || | ||| || ||||| || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1896 TAATGA 1901 |||||| Sbjct 146 TAATGA 141 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 1662 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAAT 1721 ||||||| ||| ||||| |||||||| | | |||| | || |||||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1722 TTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1781 ||||| || ||| |||||||| | ||| ||||| | | || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1782 TTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGC 1835 || | | | || ||| ||||| |||| ||||| || || ||||| |||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1836 ATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACA-CAAGTAATTATGTGGTC 1894 |||||| |||| || | | | | ||||| | | | || | ||| || ||||| | Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGC 2062 Query 1895 CTAATGACCTGGCCCACATCGTCTTCCCCGTTCT 1928 ||||||| | ||||| || ||||| |||| Sbjct 2063 CTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 2096 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| |||||||| || | |||| | || ||||||||||||||||||| |||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1792 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1793 -TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATT 1841 ||| ||||| |||| || || || |||||||| |||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1662 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAAT 1721 ||||||| ||| |||||| |||||||| || | |||| | || |||||||||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1722 TTGAACTGGTTTCCCGTACTT 1742 |||||||||||| |||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTT 20766 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 1662 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAAT 1721 ||||||| |||| ||||| |||||||| || |||| | || ||| |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1722 TTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1781 |||||||| ||| |||||||| | ||| ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1782 TTTAAAGTGCT------TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGC 1835 || | | |||| ||| ||||| || | ||||| || || ||||| ||| || Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1836 ATCATT 1841 |||||| Sbjct 22940 ATCATT 22945 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1662 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAAT 1721 ||||||| ||| ||||| |||||||| || | |||| | || || ||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1722 TTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCA 1757 |||||||||||| |||||||| | |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq33 Length=454124 Score = 84.2 bits (92), Expect = 4e-13 Identities = 162/237 (68%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 1740 || |||||||| || | |||| || ||||||| |||||||||||||||||| |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1741 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1794 || | || ||||||| | || | || | ||| | || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1795 AGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTT 1854 | |||| ||| ||||||||||||||||| |||| || || || ||| | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1855 GGACTCAGATCCA-AATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCA 1910 | | ||| ||||| || | ||| | |||||||||||| || || || | ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 173/256 (68%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 1740 || |||||||| | | |||| || ||||| |||||||||||||||||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1741 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1794 || | || ||||| | | ||| || || ||||| | || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1795 AGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTT 1854 | |||| ||| | ||||||||||||||| |||| || || || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1855 GGACTCAGATCCA-AATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACAT 1913 | | ||| ||||| || | ||| | ||||||||||| || || || | ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1914 CGTCTTCCCCGTTCTA 1929 || || || ||||| Sbjct 43780 TGTTTTACCGATTCTA 43795 >seq3059 Length=182465 Score = 82.4 bits (90), Expect = 1e-12 Identities = 108/150 (72%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| |||||||| || | |||| | || ||||||||||||||||||| |||||| ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1792 || || | ||| | ||||| | || || || | ||| | || | | |||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1793 -TTAGATAATGCGGATCTACGTCATCAATG 1821 ||| ||||| |||| ||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| |||||||| || | ||| | || |||||||||||||||||| | ||||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1792 ||||| | ||| | ||||| | || || || | ||| | || | | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1793 -TTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATT 1841 ||| ||||| | || ||||| || |||||||| |||| |||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCG 1737 ||||| |||||||| || | |||| | || ||||||||||||||||||||| |||| ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1738 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1793 ||||| | ||| ||||| | | || || || | ||| | || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 1740 || |||||||| || | |||| || |||||||||||||||||||||| ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1741 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1794 || | || || |||| | ||| || || | ||| | || | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1795 AGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATT 1841 | |||| ||| || |||||||||||||| |||| || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8631782523000