Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004071.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq3439 100 5e-18 seq3283 93.3 7e-16 seq22495 89.7 9e-15 seq54129 82.4 1e-12 seq5745 80.6 5e-12 seq35612 78.8 2e-11 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1663 TCTAAATACTCTTTATATGAAGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATG 1722 ||||| || |||||| || | | || || ||||||| || | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1723 CCCCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCC 1782 || ||||||||||||||||| || ||||| |||| |||| ||||| | ||||| Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1783 CCCATGAACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACG 1836 || | ||||| | | | || ||| | ||||| ||| |||||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1837 TTATACCATGCGTCATT 1853 ||||||||||| ||||| Sbjct 810 TTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1674 TTTATATGAAGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1733 |||||| || || || || |||||||| || | ||| |||| || || |||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1734 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTC 1793 ||||||||| |||||||| |||| ||| ||||| | ||||| || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1794 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1847 | | | || ||| | ||||| ||| || || || ||||||||||||||||| Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1848 GTCATT 1853 ||||| Sbjct 2119 ATCATT 2114 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1674 TTTATATGAAGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1733 |||||| || ||| || || |||||||| || | ||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1734 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTC 1793 ||||||||| || ||||| |||| ||| ||||||| ||||| || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1794 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1847 | | | || ||| | ||||| ||| | ||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1848 GTCATT 1853 ||||| Sbjct 206 ATCATT 201 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCG 1749 || || |||||||| || | ||| |||| || || ||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1750 TATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTCCT--TAAAG--TGTT- 1804 || |||| ||| || |||| | ||||| || | ||||| | ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1805 -TCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATT 1853 | | ||||| ||| ||||| || ||||||||||||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 138/200 (69%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1663 TCTAAATACTCTTTATATGAAGAATTGGGACCT---GGATTGCAGAGGAAGATTGTTGGG 1719 ||||| || ||||||| || ||| ||||| |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1720 ATGCCCCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGT 1779 || || ||||||||||||||||| || ||||| |||| || ||||| | |||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1780 GCCCCCATGAACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATG 1833 || || ||||||| | | | ||||| | |||| || | ||||| ||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1834 ACGTTATACCATGCGTCATT 1853 ||||||||||||||||| || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1674 TTTATATGAAGAATTGGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1733 |||||| || ||| || || |||||||| || | ||| |||| ||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1734 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCA 1769 ||||||||| || ||||| |||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8698918609290