Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004091.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 109 1e-20 seq22495 104 4e-19 seq5745 98.7 2e-17 seq490 87.8 3e-14 seq77518 82.4 1e-12 seq4104 80.6 5e-12 seq442 80.6 5e-12 seq1993 78.8 2e-11 seq35612 77.0 6e-11 seq30129 77.0 6e-11 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 195/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 || |||||| ||||||| || ||||| |||||||| || | ||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||||||| ||||| ||||||| ||||| ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1771 CCCATGAATTCCTTAAAGTGCT------TTAGATAGTGGGGGTCGACGTCATCAATGACG 1824 || | ||| | | | | |||| ||| ||| | || |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1825 TTATACCAAGCATCATTGCTGTATACCTTTGGG--CTGAGATCAAGATGTCCACACAGAT 1882 |||||||| |||||||| || ||| ||| || | | ||| | | ||| | | Sbjct 2130 TTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGT 2073 Query 1883 AATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACC 1922 | |||||||| ||||| || | |||||| |||||| || Sbjct 2072 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 ||||||||| ||||||| | | ||||| ||||||| || | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||||||| || || ||||||| |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1771 CCCATGAATTCCTTAAAGTGCT------TTAGATAGTGGGGGTCGACGTCATCAATGACG 1824 || | ||| | | | | |||| ||| ||| | || ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1825 TTATACCAAGCATCATTGCTGTATACCTTTGGG--CTGAGATCAAGATGTCCACACAGAT 1882 |||||||| |||||||| || ||| ||| || | | ||| | | ||| | | Sbjct 810 TTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGT 753 Query 1883 AATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACC 1922 | |||||||| ||||| || | |||||| |||||| || Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 |||||||| ||||||| ||| ||||| |||||||| || | ||| || | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCC 1770 || | ||||||||||||||| || || ||||||| ||||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1771 CCCATGAATTCCTTAAAGTGCT------TTAGATAGTGGGGGTCGACGTCATCAATGACG 1824 || | ||| | | | | |||| ||| ||| | || || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1825 TTATACCAAGCATCATT 1841 |||||||| |||||||| Sbjct 217 TTATACCATGCATCATT 201 >seq5745 Length=45059 Score = 98.7 bits (108), Expect = 2e-17 Identities = 193/283 (68%), Gaps = 13/283 (5%) Strand=Plus/Plus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCATAGGAAGATTGTTGGG 1707 ||||||||| ||||||| ||| || || |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1708 ATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGG 1767 || |||||||||||||||||||| || || ||||||| ||| || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1768 GCCCCCATGAATTCCT--TAAAGTGCTTTAGATA------GTGGGGGTCGACGTCATCAA 1819 || || ||||| | | ||| || |||| || ||| || || |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1820 TGACGTTATACCAAGCATCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACA 1879 ||||||||||||| || || || ||| || | | | ||| | | || | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1880 GATAATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACC 1922 |||||| ||||| || ||||| | ||||| | ||||||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq490 Length=137872 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/168 (72%), Gaps = 16/168 (10%) Strand=Plus/Minus Query 1686 ATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGT 1745 ||||||||||| |||| ||| || |||||||||||||| | |||||| |||| |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1746 ATTGGATTGCCAGTCCCTTTG---GGCCCCCATGAATTCCTTAAAGTGCTT--------T 1794 || | ||||||| || || |||||| || | ||| | | ||||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1795 AGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTG 1842 |||| ||| || ||||||||| |||||||||||||| | |||||| Sbjct 70501 AGATGCTGGAGG--GACGTCATCTATGACGTTATACCATGACTCATTG 70456 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 169/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 1681 CCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATAC 1740 || |||||||| || | ||| ||| || || |||||||||||||||| || | ||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1741 TTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1794 |||| ||| || || |||| | ||| || || | ||| | | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1795 AGATA--GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCT 1852 | ||| ||| || ||| |||||||||||||||||||| || || || |||| | Sbjct 2280 AAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTT 2223 Query 1853 TTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACA 1912 | | | ||| | | || | |||||| ||||| || ||| | | ||||| | Sbjct 2222 TCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAA 2163 Query 1913 TTGTTTTACC 1922 ||||||||| Sbjct 2162 CTGTTTTACC 2153 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 || |||||| ||||||| ||| |||||| |||||||| || | ||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTAT 1747 || ||||||||||||||||| || || ||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1608 ATTATGTATAGCCCAATTTTTTAATGCGGAATTCTTTTCTTCGTCTAAGAACTCTTTATA 1667 ||| |||| || |||| |||| | ||||| ||| || ||||| |||||| Sbjct 22708 ATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCCAAGAATGTTTTATA 22767 Query 1668 GCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAAC 1727 | |||| ||||| |||||||| || ||| |||| || | |||||||||||||| Sbjct 22768 GGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAAC 22827 Query 1728 TGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAA 1787 || || || ||||||| ||||| ||| ||| | ||| || || | ||| | | | | Sbjct 22828 TGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATA 22887 Query 1788 GTGCT------TTAGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATT 1841 |||| ||| ||| | | |||||| || || |||||||||| |||||||| Sbjct 22888 ATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCATCATT 22945 >seq1993 Length=81530 Score = 78.8 bits (86), Expect = 2e-11 Identities = 116/163 (71%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 1681 CCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATAC 1740 || |||||||| || | ||| ||| || || |||||||||||||||| || || ||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1741 TTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1794 |||| ||| || ||||| | | ||| || | | ||| | | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1795 AGATA--GTGGGGGTCGACGTCATCAATGACGTTATACCAAGC 1835 | ||| ||| || |||||||||||||||||||||||| || Sbjct 74283 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGC 74243 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 || ||||| ||||||| ||| ||||| |||||||| || | ||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCA 1757 || ||||||||||||||||| || || ||||||| |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1651 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATA 1710 || |||||| ||| ||| ||| ||||| |||||||| || | ||| |||| || Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1711 CCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCA 1757 || ||||||||||||||| | || || ||||||| ||||| ||||| Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8679736870350