Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004147.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq3283 125 1e-25 seq22495 118 2e-23 seq3439 118 2e-23 seq442 102 1e-18 seq77518 100 5e-18 seq5745 100 5e-18 seq33 100 5e-18 seq54129 96.9 6e-17 seq4104 95.1 2e-16 seq3059 95.1 2e-16 seq1993 93.3 7e-16 seq815 93.3 7e-16 seq80468 91.5 3e-15 seq953 91.5 3e-15 seq20728 89.7 9e-15 seq35612 86.0 1e-13 seq30129 86.0 1e-13 seq4295 77.0 6e-11 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 1668 TCCAAGAACTCTTTATAGC-TTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTAT 1726 ||||||||| ||||||| |||| | ||||| |||||||| || | |||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1727 TCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1786 || ||||||||||||||||| || |||||||||| ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1787 CCCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGAC 1840 || | ||| | | | | |||| ||||||||| |||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1841 GTTGTACCAGGCATCATT 1858 ||| ||||| |||||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 118 bits (130), Expect = 2e-23 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 || ||||| ||||||| | | | ||||| |||||||| || | |||| | | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCC 1787 || | ||||||||||||||| ||||||||||||| ||| | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACG 1841 || | ||| | | | | |||| ||||||||| |||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1842 TTGTACCAGGCATCATT 1858 || ||||| |||||||| Sbjct 217 TTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 || |||||| ||||||| | | | ||||| ||||||| || | |||| | || || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCC 1787 || ||||||||||||||||| ||||||||||||| || | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACG 1841 || | ||| | | | | |||| ||||||||| |||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1842 TTGTACCAGGCATCATT 1858 || ||||| |||||||| Sbjct 810 TTATACCATGCATCATT 794 >seq442 Length=237535 Score = 102 bits (112), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 |||||||| ||||||| | | || ||||| |||||||| || |||| | || || Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCC 1787 | |||||||||||||||| ||||||||||||| ||| | ||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACG 1841 || | ||| | | | | |||| ||||||||| || | |||||| || || ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1842 TTGTACCAGGCATCATT 1858 || |||| |||||||| Sbjct 22930 TTATACC-TGCATCATT 22945 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTAC 1757 || |||||||| || | |||| || || || |||||||||||||||| ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1811 |||| |||||| || |||| | ||| || || | ||| | | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1812 AAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 |||||| ||| ||| |||||||||||||| ||||| || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTAC 1757 || |||||||| | | |||| || || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1811 |||| |||||| ||||| | | ||| || || ||||| | | | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1812 AAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 |||||| ||| || ||||||||||||||| ||||| || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTAC 1757 || |||||||| || | |||| || || || | ||||||||||||||| ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1811 |||| |||||| ||||||| | || | || | ||| | | | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1812 AAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 |||||| ||| |||||||||||||||||| ||||| || || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1695 GGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCG 1754 ||||| |||||||| || | |||| | || || || ||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1755 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1809 ||||||| ||| | || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1810 -TTAAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 ||||||||| |||| ||| || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 95.1 bits (104), Expect = 2e-16 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 ||||||||| ||||||| | | | |||||| |||||||| || | |||| | || || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTAT 1764 || ||||||||||||||||| ||||||||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3059 Length=182465 Score = 95.1 bits (104), Expect = 2e-16 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 ||||||||| ||||| | | | | ||||| |||||||| || | |||| | || || Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCC 1787 || ||||||||||||| ||| |||||||| |||| ||| | | ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATG 1838 || | ||| | | | | |||| ||||||||| |||| |||||| |||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTAC 1757 || |||||||| || | |||| || || || |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1811 |||| |||||| ||||| | | ||| || | | ||| | | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1812 AAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGC 1852 |||||| ||| |||||||||||||||||| ||||| || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq815 Length=151552 Score = 93.3 bits (102), Expect = 7e-16 Identities = 138/195 (71%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 1670 CAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCC 1729 ||| ||| ||||||| | | | ||||| |||||||| || | ||| | || || || Sbjct 85448 CAATAACGTTTTATAGGATAA-TCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCC 85390 Query 1730 TCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCC 1789 |||||||||||| | || ||| ||||||||| ||| | | ||||| | || || || Sbjct 85389 GCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCC 85330 Query 1790 CATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACGTT 1843 | ||| | | | | | || ||||||||| | || |||||| || |||||||| Sbjct 85329 TACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTT 85270 Query 1844 GTACCAGGCATCATT 1858 ||||| |||||||| Sbjct 85269 ATACCATGCATCATT 85255 >seq80468 Length=4946 Score = 91.5 bits (100), Expect = 3e-15 Identities = 139/197 (71%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 1670 CAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCC 1729 |||||| ||||||| | | | ||||| ||||||| || | |||| | || ||||| Sbjct 4241 CAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCC 4300 Query 1730 TCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA--GTCCCTTTGGGCC 1787 |||||||| ||||| || ||||||||||||||||| | | ||| || | || || Sbjct 4301 GCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGTGCG 4357 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACG 1841 || | ||| | | | | |||| ||||||||| | | |||||| | |||||| Sbjct 4358 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACG 4417 Query 1842 TTGTACCAGGCATCATT 1858 || ||||| |||| ||| Sbjct 4418 TTATACCATGCATAATT 4434 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 || ||||| ||||||| | | | ||||| |||||||| | | |||| | || || Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCC 1787 || ||||||||||||| || ||||||||||||| ||| ||||| | | || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1788 CCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCAATGACG 1841 || | ||| | | | | | || ||||||||| |||| |||||| || || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1842 TTGTACCAGGCATCATT 1858 || ||||| |||||||| Sbjct 1993 TTATACCATGCATCATT 2009 >seq20728 Length=3653 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/143 (74%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1722 GGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTT 1781 || || || ||||||||||||| ||| ||||||||||||| ||| | |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1782 TGGGCCCCCATGAATTCCTTAAAGTGCT------TTAAATAATGCGGATCGACGTCATCA 1835 || || || | ||| | | | | |||| ||||||||| |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1836 ATGACGTTGTACCAGGCATCATT 1858 |||||||| || || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 |||||||| ||||||| | | | ||||| |||||||| || | |||| | || || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1774 || ||||||||||||||||| ||||||||||||| || | ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1668 TCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATT 1727 ||||||||| ||| ||| | | | ||||| |||||||| || | |||| | || || Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1728 CCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1774 || ||||||||||||||| | ||||||||||||| ||| | ||||| Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq4295 Length=67413 Score = 77.0 bits (84), Expect = 6e-11 Identities = 122/172 (71%), Gaps = 11/172 (6%) Strand=Plus/Minus Query 1696 GTCCT-GGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCG 1754 ||||| |||||| |||| | ||| || ||||| |||||||||||| |||| || ||| Sbjct 46849 GTCCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCG 46790 Query 1755 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTT--- 1811 ||||| | |||||| | ||| | |||||| | |||| || || | | ||| Sbjct 46789 TACTTGGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTC 46730 Query 1812 ---AAATA--ATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 ||||| || ||| |||||||| || ||||||||||| |||| ||| Sbjct 46729 TGCAAATAGGATAGAGAT--ACGTCATCTATAACGTTGTACCATGCATTATT 46680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8670146000880