Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004153.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3439 118 2e-23 seq3283 113 8e-22 seq22495 109 1e-20 seq35612 93.3 7e-16 seq953 93.3 7e-16 seq5745 91.5 3e-15 seq54129 87.8 3e-14 seq20728 87.8 3e-14 seq4104 87.8 3e-14 seq442 87.8 3e-14 seq30129 84.2 4e-13 seq77518 82.4 1e-12 seq815 82.4 1e-12 seq33 82.4 1e-12 seq3059 78.8 2e-11 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAAT 1725 ||||||| | | | || || ||||||| || | |||| |||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1726 TTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1785 ||||||||||||||||||||||| |||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1786 TTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGC 1839 || | |||||| ||| || | |||| || |||||||||||||| |||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1840 ATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGACC 1899 |||||| |||| || | | ||||| | | || | || |||||||| || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1900 CAATGATCGAGCCCA 1914 ||||| |||||||| Sbjct 739 TAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 180/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 1666 TTTATAGC-TTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAA 1724 ||||||| |||| | || || |||||||| || | |||| |||||| || ||||||| Sbjct 2299 TTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1725 TTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATT 1784 ||||||||||||| |||||||||| ||| ||||| | | || || || | ||| | Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1785 CTTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAG 1838 || | |||||| ||| || | |||| ||||| ||||||||||| |||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1839 CATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGAC 1898 ||||||| |||| || | | ||||| | | || | || |||||||| | Sbjct 2120 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGC 2061 Query 1899 CCAATGATCGAGCCCA 1914 | ||||| |||||||| Sbjct 2060 CTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 109 bits (120), Expect = 1e-20 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1655 TCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATG 1714 |||| | || ||||||| | | | || || |||||||| || | |||| | |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1715 CCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1774 || | ||||||||||||||||||||||||||||| ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1775 CCCATGAATTCTTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATCGATGACG 1828 || | ||| | || | |||||| ||| || | |||| | ||||||||||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1829 TTGAACCAAGCATCATT 1845 || |||| |||||||| Sbjct 217 TTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 93.3 bits (102), Expect = 7e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAAT 1725 ||||||| | | | || || |||||||| || | |||| ||||||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1726 TTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCA 1761 ||||||||||||||||||||||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 1655 TCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATG 1714 |||| | || ||||||| | | | || || |||||||| | | |||| |||||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1715 CCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1774 || ||||||||||||| || |||||||||||||| ||| ||||| | | || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1775 CCCATGAATTCTTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATCGATGACG 1828 || | ||| | || | ||| || ||| || | |||| ||||| ||||| ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1829 TTGAACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACA-CAGATA 1887 || |||| |||||||| |||| || | | ||||| | | | | || | || Sbjct 1993 TTATACCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTA 2051 Query 1888 ATTGTGTGGACCCAATGATCGAGCCCA 1914 |||||||| || ||||| |||||||| Sbjct 2052 GTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 162/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 1684 CCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTA 1743 ||| |||||||| | | |||| |||||| ||||||||||||||||||||||| ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT----- 1798 ||||| || ||||| | | ||| || || ||||| | || | |||| ||| Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1799 -AGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATTACTGTACACCTT 1857 | || ||| | |||||| |||||||| |||| || || || || || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1858 TGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCA 1914 | ||||||| | | || | |||||| ||||||||||| || || ||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1682 GGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCG 1741 || || |||||||| || | |||| |||||| || ||||||||||||| |||||||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1796 ||||||| ||| || |||| || || || | ||| | || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 -TTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATT 1845 ||| || | |||| || || ||||||||||| |||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq20728 Length=3653 Score = 87.8 bits (96), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 1708 TGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCT 1767 |||||| || ||||||||||||| ||||||||||||||||| ||| |||| || | Sbjct 1441 TGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCG 1499 Query 1768 TTGGGCCCCCATGAATTCTTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATC 1821 || || || | ||| | || | |||||| ||| || | |||| |||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1822 GATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACA 1881 ||||||||| | || |||||||| |||| || | | ||||| | | | | || Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCA 1618 Query 1882 -CAGATAATTGTGTGGACCCAATGATCGAGCCCA 1914 | || |||||||| | ||||| |||||||| Sbjct 1619 TTATGTAGTTGTGTGGGACTAATGAACGAGCCCA 1652 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAAT 1725 ||||||| | | | ||| || |||||||| || | |||| |||||| || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1726 TTGAACTGGTTTTCCGTACTTTG 1748 ||||||||||||||||||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTTTG 20764 >seq442 Length=237535 Score = 87.8 bits (96), Expect = 3e-14 Identities = 176/256 (69%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAAT 1725 ||||||| | | || || || |||||||| || |||| |||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1726 TTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1785 |||||||| |||||||||||||| ||| ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1786 TTTAAAATGCT------TTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGC 1839 || | |||||| ||| || | || | ||||| ||||| ||||| ||| || Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1840 ATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACA-CAGATAATTGTGTGGAC 1898 |||||| |||| || | ||||||| | | | || | || |||||||| | Sbjct 22940 ATCATTTGAGTACGTTTTCAAATTAAAATCAATA-AATCTCATTATGTAGTTGTGTGGGC 22998 Query 1899 CCAATGATCGAGCCCA 1914 | ||||| ||||| || Sbjct 22999 CTAATGAACGAGCTCA 23014 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1682 GGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCG 1741 || || |||||||| || | |||| |||||| || ||||||||||||||| |||||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1742 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTT 1797 ||||||| ||| ||||| | | || || || | ||| | || | ||||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1684 CCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTA 1743 ||| |||||||| || | |||| |||||| || |||||||||||||||| |||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT 1798 ||||| || || |||| | ||| || || | ||| | || | |||||||| Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTT 2287 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1682 GGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCG 1741 || || |||||||| || | ||| |||||| || |||||||||||| | |||||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1742 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1796 ||||||| ||| | ||||| | || || || | ||| | || | ||| || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1797 -TTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATT 1845 ||| || | | || ||||| ||||||||||| |||| |||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 160/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 1684 CCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTA 1743 ||| |||||||| || | |||| |||||| || | |||||||||||||||||||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------T 1797 ||||| || ||||||| | || | || | ||| | || | |||| | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1798 TAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATTACTGTACACCTT 1857 || || ||| |||||||| |||||||| |||| || || || ||| | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1858 TGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCA 1914 | ||||||| | | || | ||||| ||||||||||| || || ||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1682 GGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCG 1741 || || |||||||| || | |||| |||||| || ||||||||||||| |||||||||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1742 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTT 1797 || |||| ||| | ||||| | || || || | ||| | || | ||||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390