Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq5745 91.5 3e-15 seq3283 84.2 4e-13 seq77518 78.8 2e-11 seq4104 78.8 2e-11 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 141/201 (70%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATGCGGTCCT---GGATTGCAGAGGAAGATAGCGGG 1719 ||| |||||| ||||||| ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1720 AATTCCACCTTTAATTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCTTTG 1779 ||| |||||||||||||| ||||| || ||||| || | |||||| ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1780 GGCCCCCATGAATTCCTTAAAGTGTT------TTAGGTAGTGGGGATCGACGTCATCAAT 1833 || || ||||| | | | | |||| ||| || ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1834 GACGTTGTACCAGGCGTCATT 1854 |||||| ||||| ||||| || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 137/198 (69%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATGCGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||||||| || ||||| |||||||| || | |||| ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1723 TCCACCTTTAATTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCTTTGGGC 1782 || ||||||||||| ||||| || ||||| || | ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1783 CCCCATGAATTCCTTAAAGTGTT------TTAGGTAGTGGGGATCGACGTCATCAATGAC 1836 || | ||| | | | | || | ||| || | ||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1837 GTTGTACCAGGCGTCATT 1854 ||| ||||| || ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 78.8 bits (86), Expect = 2e-11 Identities = 167/247 (68%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 1619 GCATTCTTTAAAGCCCA--ATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTT 1676 ||||| | ||||| ||| ||||| | | ||||| ||| ||||||||| ||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTT--GAATTTGAATCTAAATCCAAGAATGCTT 2421 Query 1677 TATAGCTGGAATGCGGTCCT---GGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAA 1733 |||| ||| || || |||||||| || | |||| ||||| || ||||||| Sbjct 2420 TATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAA 2361 Query 1734 TTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATT 1793 |||| |||| ||| |||| || | |||||| || |||| | ||| || || | ||| | Sbjct 2360 TTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACT 2301 Query 1794 CCTTAAAGTGTT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGG 1847 | | | || | ||| || ||| ||| |||||||||||||| ||||| | Sbjct 2300 GTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACG 2241 Query 1848 CGTCATT 1854 |||| || Sbjct 2240 CGTCGTT 2234 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATGCGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||||||| ||| ||||| |||||||| || | |||| ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1723 TCCACCTTTAATTTGCACTGGCTTTCCGTATTT 1755 || ||||||||||| ||||| |||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692524696310