Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 105 1e-19 seq35612 87.8 3e-14 seq30129 87.8 3e-14 seq22495 87.8 3e-14 seq4104 87.8 3e-14 seq3439 87.8 3e-14 seq5745 86.0 1e-13 seq3059 86.0 1e-13 seq33 82.4 1e-12 seq80468 80.6 5e-12 seq77518 80.6 5e-12 seq6801 77.0 6e-11 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAAC-TTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAA 1726 |||||||||| |||||| |||| |||||||| |||||||| || | ||| | |||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAA 2253 Query 1727 TTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGG 1786 | |||||||||||||||||||| |||||||| |||| ||| | ||||| | || | Sbjct 2252 TCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTG 2193 Query 1787 CCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATTA 1840 | || | ||| | | | | |||| ||| || | || ||||| || || | Sbjct 2192 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1841 CGTTATACCAGGCATCATT 1859 |||||||||| |||||||| Sbjct 2132 CGTTATACCATGCATCATT 2114 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 ||||||||| |||||| | | |||||||| |||||||| || | ||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1775 |||||||||||||||||||| || ||||| |||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 |||||||||| ||| || | | |||||||| |||||||| || | ||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1775 |||||||||||||||||| | || ||||| |||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 ||| ||||| |||||| | | |||||||| |||||||| || | ||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1787 |||| ||||||||||||||| || ||||| |||| ||| | ||||||| || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1788 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATTAC 1841 || | ||| | | | | |||| ||| || | || | |||||| || || Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1842 GTTATACCAGGCATCATT 1859 ||||||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 |||||||||| |||||| | | || ||||| |||||||| || | ||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTAT 1765 |||||||||||||||||||| || ||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 ||| |||||| |||||| | | |||||||| ||||||| || | ||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1787 |||||||||||||||||||| || ||||| |||| || | ||||| | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1788 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATTAC 1841 || | ||| | | | | |||| ||| || | || || ||||| || || Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1842 GTTATACCAGGCATCATT 1859 ||||||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 13/203 (6%) Strand=Plus/Plus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCT---GGATTGCAGAGGAAGATTGTGGG 1724 ||| |||||| |||||||| | | || || || |||||||| | | ||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1725 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTG 1784 ||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1785 GGCCCCCATGAATTCCT--TAAAGTGCTTTAGGTA------GTGGGGGTCTACGTCATCA 1836 || || ||||| | | ||| || |||| || ||| || | ||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCA 43684 Query 1837 ATTACGTTATACCAGGCATCATT 1859 || ||||||||||| || || || Sbjct 43685 ATGACGTTATACCATGCGTCGTT 43707 >seq3059 Length=182465 Score = 86.0 bits (94), Expect = 1e-13 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 |||||||||| ||||| | | |||||||| |||||||| || | ||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1777 |||||||||||||||| ||| || ||||| |||| ||| | | ||||| Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCT--GGATTGCAGAGGAAGATTGTGGGA 1725 ||| |||||| |||||||| | || || || |||||||| || | ||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1726 ATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1777 || |||| ||||||||||||||| || ||||| |||| |||||| ||||||| Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGT 403224 >seq80468 Length=4946 Score = 80.6 bits (88), Expect = 5e-12 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAAT 1727 || |||||| |||||| | | |||||||| ||||||| || | ||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1728 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATT 1766 |||||||||||| ||||| || || ||||| |||||||| Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 13/203 (6%) Strand=Plus/Minus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCT---GGATTGCAGAGGAAGATTGTGGG 1724 ||||||||| |||||||| | | || || || |||||||| || | ||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1725 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTG 1784 ||| ||||||||||||||||||| || |||| |||| |||||| || |||| ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1785 GGCCCCCATGAATTCCTTAAAGTGC--TTTAGGTA------GTGGGGGTCTACGTCATCA 1836 || || | ||| | | | | ||| |||| || ||| || || |||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCA 2257 Query 1837 ATTACGTTATACCAGGCATCATT 1859 || ||||||||||| || || || Sbjct 2256 ATGACGTTATACCACGCGTCGTT 2234 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 6e-11 Identities = 85/113 (75%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1668 ATCCAAGAACTCTTTATAACTTGAGTCAGGTCCT---GGATTGCAGAGGAAGATTGTGGG 1724 |||||||||| ||||||| | || || || ||| |||| || | ||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1725 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1777 ||| |||||||||||||||||||| || ||||| |||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270