Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004558.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 1e-20 seq22495 102 1e-18 seq77518 93.3 7e-16 seq5745 93.3 7e-16 seq3439 91.5 3e-15 seq33 89.7 9e-15 seq1993 87.8 3e-14 seq35612 86.0 1e-13 seq4104 86.0 1e-13 seq442 86.0 1e-13 seq80468 84.2 4e-13 seq54129 78.8 2e-11 seq30129 78.8 2e-11 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 174/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 1622 TGCATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTT 1680 |||||||| || || ||| ||||| | | ||||| ||| ||||||| | || Sbjct 2356 TGCATTTTGTAGAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCCAAGAACGTTT 2298 Query 1681 TATAGC-TGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATT 1739 ||||| | || | ||||| |||||||| || | | || | ||||| |||||||||||| Sbjct 2297 TATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATT 2239 Query 1740 TGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCT 1799 |||||||| ||||||||||||| ||| | ||||| | | || || || | ||| | | Sbjct 2238 TGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGT 2179 Query 1800 TTAAAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCA 1853 | | | |||| ||| || | || |||||| || |||||||| ||||| ||| Sbjct 2178 TGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCA 2119 Query 1854 TCATT 1858 ||||| Sbjct 2118 TCATT 2114 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 169/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 1624 CATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTA 1682 |||||| ||||| ||| ||||| | | ||||| ||| ||| ||| || |||| Sbjct 441 CATTTTGTAAAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCTAAGAATGTTTTA 383 Query 1683 TAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGA 1742 ||| | | ||||| |||||||| || | | || | |||| |||| |||||||||| Sbjct 382 TAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGA 323 Query 1743 ACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTA 1802 ||||| || |||||||||| ||| | ||||||| | || || || | ||| | || | Sbjct 322 ACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGA 263 Query 1803 AAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCA 1856 | |||| ||| || | || || |||||| |||||||| ||||| |||||| Sbjct 262 CAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCA 203 Query 1857 TT 1858 || Sbjct 202 TT 201 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 174/249 (70%), Gaps = 15/249 (6%) Strand=Plus/Minus Query 1622 TGCATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTT 1680 |||||||| ||||| ||| | |||| | | ||||| || ||||||| || ||| Sbjct 2479 TGCATTTTGTAAAGTCCACGATTTTCAATTT-GAATTTGAATCTAAATCCAAGAATGCTT 2421 Query 1681 TATA-GCTGGAGTTGGGTCCT--GGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAA 1737 |||| | | | ||| || |||||||| || | | || ||||| |||||||||| Sbjct 2420 TATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAA 2361 Query 1738 TTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATT 1797 ||||||||| || ||||||||| |||||| || |||| | ||| || || | ||| | Sbjct 2360 TTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACT 2301 Query 1798 CTTTAAAGTGC--TTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTTGTACCA 1849 || | | ||| |||| || ||| || ||| |||||||||||||| ||||| Sbjct 2300 GTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCA 2243 Query 1850 GGCATCATT 1858 || || || Sbjct 2242 CGCGTCGTT 2234 >seq5745 Length=45059 Score = 93.3 bits (102), Expect = 7e-16 Identities = 123/169 (73%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 1698 CCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1757 || |||||||| | | | || ||||| || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1815 |||| |||||| ||||| | | ||| || || ||||| | || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1816 A------GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 | ||| || || ||||||||||||||| ||||| || || || Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1695 GGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1754 ||||| ||||||| || | | || | ||||| |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1755 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1809 ||||||| || | ||||| | | || || || | ||| | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1810 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 ||| || | || ||| ||||| |||||||| ||||| |||||||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 122/169 (72%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1757 || |||||||| || | | || ||||| |||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1815 |||| |||||| ||||||| | || | || | ||| | || ||| | |||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1816 A------GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 | ||| || |||||||||||||||||| ||||| || || || Sbjct 403182 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 118/163 (72%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1757 || |||||||| || | | || ||||| ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1758 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1815 |||| |||||| ||||| | | ||| || | | ||| | || ||| | |||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1816 A------GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGC 1852 | ||| || |||||||||||||||||| ||||| || Sbjct 74283 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGC 74243 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 1622 TGCATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTT 1680 |||||||| || || ||| ||||| | | ||||| ||| ||||||| || || Sbjct 1434 TGCATTTTGTAGAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCCAAGAATGTTT 1492 Query 1681 TATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTT 1740 ||||| | | ||||| |||||||| || | | || | ||||| ||||||||||||| Sbjct 1493 TATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTT 1552 Query 1741 GAACTGGCTTCCCGTACTTTGTATTTGATTGCCA 1774 ||||||| || |||||||||| || | ||||| Sbjct 1553 GAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 1622 TGCATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTT 1680 |||||||| || || ||| ||||| | | ||||| ||| ||||||| | || Sbjct 20903 TGCATTTTGTAGAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCCAAGAACGTTT 20845 Query 1681 TATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTT 1740 ||||| | | |||||| |||||||| || | | || | ||||| ||||||||||||| Sbjct 20844 TATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 20785 Query 1741 GAACTGGCTTCCCGTACTTTGTAT 1764 ||||||| || |||||||||| || Sbjct 20784 GAACTGGTTTTCCGTACTTTGCAT 20761 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1667 ATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAAT 1726 ||||||| || ||||||| | || ||||| |||||||| || | || | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1727 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1786 |||||||||||||||||| || |||||||||| ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1787 CCCCATGAATTCTTTAAAGTGCTTT 1811 || | ||| | || | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq80468 Length=4946 Score = 84.2 bits (92), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 1622 TGCATTTTTTAAAGCCCA-GTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTT 1680 |||||||| ||||| ||| ||||| | | ||||| ||| || |||| || || Sbjct 4193 TGCATTTTGTAAAGTCCAAGTTTTCCAATAT-GAATTGGACTCCATATTCAAGAATGTTT 4251 Query 1681 TATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTT 1740 ||||| | | ||||| ||||||| || | | || | ||||||||||||||||| | Sbjct 4252 TATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCT 4311 Query 1741 GAACTGGCTTCCCGTACTTTGTATT 1765 |||| || || |||||||||||||| Sbjct 4312 GAACAGGTTTTCCGTACTTTGTATT 4336 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1695 GGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1754 ||||| |||||||| || | | || | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1755 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1809 ||||||| ||| | || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1810 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1858 ||| || | || ||| || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1695 GGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1754 ||||| |||||||| || | | || | ||||| |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1755 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1810 ||||||| ||| | ||||| | | || || || | ||| | || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270