Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 113 8e-22 seq22495 102 1e-18 seq54129 96.9 6e-17 seq953 87.8 3e-14 seq815 87.8 3e-14 seq20728 84.2 4e-13 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 185/261 (71%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| |||||||| || | |||| | ||||| || ||||||||||||| || ||||| Sbjct 2284 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCC 2225 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 |||||||| ||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 2224 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 2166 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTATA 1871 ||||||||| ||| ||||| || |||||||| |||||||||||||| || || Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTA 2108 Query 1872 CCTTTGGG--CTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGC 1929 | ||| || | | || | | ||| || || || |||||||||| || | || Sbjct 2107 CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 2048 Query 1930 CCACATTGTTTTGCCTGTTCT 1950 ||| |||||| ||| |||| Sbjct 2047 CCATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 184/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| ||||||| || | |||| | ||||| || ||||||||||||| || || || Sbjct 964 AGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 905 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 |||||||| |||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 904 GTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 846 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTATA 1871 ||||||||| ||| || ||||| |||||||| |||||||||||||| || || Sbjct 845 TAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTA 788 Query 1872 CCTTTGGG--CTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGC 1929 | ||| || | | || | | ||| || || || |||||||||| || | || Sbjct 787 CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 728 Query 1930 CCACATTGTTTTGCCTGTTCT 1950 ||| |||||| ||| |||| Sbjct 727 CCATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 127/172 (74%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| |||||||| || | |||| | |||| || | ||||||||||| || || || Sbjct 371 AGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCC 312 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 |||||||| ||| ||||||| | ||| || || | ||| | |||| | |||| Sbjct 311 GTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCT 253 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1863 ||||||||| ||| | |||||| |||||||| |||||||||||||| Sbjct 252 TAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1700 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCG 1759 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1760 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCT----- 1814 ||||||| ||| || |||| ||| || || | ||| | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1815 -TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1863 ||||||||| ||| || || || |||||||| |||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 124/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| |||||||| | | |||| | ||||| || |||||||||||||| | || || Sbjct 1839 AGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCC 1898 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 |||||||| ||| ||||| | | ||| | || | ||| | |||| | | || Sbjct 1899 GTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT-GTTGATAATACTTTT 1957 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1863 ||||||||| ||| ||||| || || ||||| |||||||||||||| Sbjct 1958 TAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq815 Length=151552 Score = 87.8 bits (96), Expect = 3e-14 Identities = 124/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || | Sbjct 85425 AGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTC 85366 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 |||||||| ||| | ||||| | ||| || || | ||| | |||| | | || Sbjct 85365 GTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACT-ATTGATAATACTTCT 85307 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1863 ||||||||| | | ||||| || |||||||| |||||||||||||| Sbjct 85306 AAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 107/144 (74%), Gaps = 9/144 (6%) Strand=Plus/Plus Query 1727 GGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTC 1786 ||||| |||||||||||||||| || || |||||||||| ||| |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1787 TGGGCCCCCATGAATTCCTTGA-AGTGCTTT------AAATAATGCGGGTCTACGTCATC 1839 || || || | ||| | |||| | |||||| ||||||| ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTG-TTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1840 AATGACGTTGTACCATGCATCATT 1863 |||||||| || ||||||||||| Sbjct 1560 GATGACGTTATATCATGCATCATT 1583 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 1699 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1758 |||||| |||||||| || | |||| | ||||| || |||||||||||||| || || || Sbjct 20420 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCC 20361 Query 1759 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1814 ||| |||| ||| | ||||| | ||| || || | ||| | |||| | |||| Sbjct 20360 GTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 20302 Query 1815 ---TTAAATAATGCGGGTCTACGTCATCAATG 1843 ||||||||| ||| ||||| |||||| Sbjct 20301 TAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8781793580325