Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004582.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq3439 122 2e-24 seq77518 113 8e-22 seq3283 113 8e-22 seq5745 109 1e-20 seq22495 102 1e-18 seq33 102 1e-18 seq1993 91.5 3e-15 seq54129 84.2 4e-13 seq35612 78.8 2e-11 seq490 77.0 6e-11 seq442 77.0 6e-11 >seq3439 Length=62978 Score = 122 bits (134), Expect = 2e-24 Identities = 182/257 (71%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 1656 TTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAAT 1715 |||||| ||| | | || ||| ||||||| || | ||| | || || || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1716 TTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTC 1775 ||||||||| || |||||||||| ||| | ||||| | | || || || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1776 TTTAAAGTGCT------TGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGC 1829 || | | |||| | | | | |||| ||||||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1830 ATCATTGCTGTAAACTTTGGGGCTTAAATC--TAAATGACCGCATAAGTAATTATGAGGC 1887 |||||| ||| ||||| | ||||| ||||| || || ||| || || || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGG 742 Query 1888 CCTAATGACCTAGCCCA 1904 |||||||| | |||||| Sbjct 741 CCTAATGAACGAGCCCA 725 >seq77518 Length=14724 Score = 113 bits (124), Expect = 8e-22 Identities = 143/193 (74%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 1652 ATTCTTTATAAGATGAGTTTGG---CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCAC 1708 || ||||||||||| | | ||| |||||||||||| || | ||| || || || | Sbjct 2426 ATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGC 2367 Query 1709 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1768 ||||||||||||||| || ||||||||| ||||| || |||| | ||| || || | Sbjct 2366 CTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTA 2307 Query 1769 TGAACTCTTTAAAGTGC---TTGAGGAAGT--GC-GGATCGACATCATCAATGACGTTAT 1822 ||||| || | | ||| || | || | || ||| |||||||||||||||||||| Sbjct 2306 CGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTAT 2247 Query 1823 ACCACGCATCATT 1835 ||||||| || || Sbjct 2246 ACCACGCGTCGTT 2234 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 180/257 (70%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 1656 TTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAAT 1715 |||||| ||| | || ||||||||||| || | ||| | || || || |||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1716 TTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTC 1775 ||||||||| ||||||||||||| || | ||||| | | || || || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1776 TTTAAAGTGCT------TGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGC 1829 || | | |||| | | | | |||| ||| || || |||||||||||||| || Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1830 ATCATTGCTGTAAACTTTGGGGCTTAAATC--TAAATGACCGCATAAGTAATTATGAGGC 1887 |||||| ||| ||||| | ||||| ||||| || || ||| || || || Sbjct 2119 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGG 2062 Query 1888 CCTAATGACCTAGCCCA 1904 |||||||| | |||||| Sbjct 2061 CCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 190/271 (70%), Gaps = 9/271 (3%) Strand=Plus/Plus Query 1655 CTTTATAAGATGAGTTTGG---CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTT 1711 ||||||||||| | | ||| |||||||||||| | | ||| || || ||||||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1712 TAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1771 ||||||||||||| || |||||||||| ||||| ||||| | | ||| || || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1772 ACTCTT--TAAAG-TGCTTGAGGAAGT--GC-GGATCGACATCATCAATGACGTTATACC 1825 ||| || ||| | | || | || | || ||| || ||||||||||||||||||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1826 ACGCATCATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAG 1885 | || || || || ||| | | ||||| | | || || |||||||| | Sbjct 43698 ATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTG 43757 Query 1886 GCCCTAATGACCTAGCCCACATCGTTTTACC 1916 | || || || | ||||| | |||||||| Sbjct 43758 GACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1656 TTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAAT 1715 |||||| ||| | | || ||||||||||| || | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1716 TTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTC 1775 ||||||||| || |||||||||| || | ||||||| | || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1776 TTTAAAGTGCT------TGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGC 1829 || | | |||| | | | | |||| || ||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1830 ATCATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAGGCCC 1889 |||||| ||| ||||| | ||||| ||| || || ||| || || || || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1890 TAATGA 1895 |||||| Sbjct 146 TAATGA 141 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 186/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1655 CTTTATAAGATGAGTTTGG--CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTT 1712 |||||||||| | | ||| |||||||||||| || | ||| || || || | ||| Sbjct 403324 CTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTT 403265 Query 1713 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1772 |||||||||||| || |||||||||| ||||| ||||||| | || | || | ||| Sbjct 403264 AATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAA 403205 Query 1773 CTCTT--TAAAG-TGCTTGAGGAAGT--GC-GGATCGACATCATCAATGACGTTATACCA 1826 || || ||| | | || | || | || ||| ||| |||||||||||||||||||| Sbjct 403204 CTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCA 403145 Query 1827 CGCATCATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAGG 1886 ||| || || ||| | | | | ||||| | | || || ||||||||| || Sbjct 403144 CGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGG 403085 Query 1887 CCCTAATGACCTAGCCCACATCGTTTT 1913 || || || | ||||| | ||||| Sbjct 403084 ACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1674 CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1733 |||||||||||| || | ||| || || || |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1734 CTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAG 1790 ||||| ||||| ||||| | | ||| || | | ||||| || ||| | | || | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1791 GAAGT--GC-GGATCGACATCATCAATGACGTTATACCACGC 1829 || | || ||| ||| ||||||||||||||||||||||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 166/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1672 GGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCG 1731 || ||||||||||| || | ||| | || || || ||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1732 TACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTG 1788 ||||||| || | || |||| || || || | ||||| || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1789 AGGA---AGTGCGGATCGACATCATCAATGACGTTATACCACGCATCATTGCTGTAAACT 1845 | | | | |||| |||||| || |||||||||||||| ||||||| ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1846 TTGGGGCTTAAAT--CTAAATGACCGCATAAGTAATTATGAGGCCCTAATGACCTAGCCC 1903 |||| | |||| ||||| || || ||| || || | | |||||| | ||||| Sbjct 2080 TTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1904 A 1904 | Sbjct 2022 A 2022 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1656 TTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAAT 1715 |||||| ||| | | || ||||||||||| || | ||| | || || || |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1716 TTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCA 1751 ||||||||| || |||||||||| ||| | ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 6e-11 Identities = 119/166 (72%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 1680 ATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGT 1739 |||||| |||| |||| |||||||||||||||||||| | |||||| | || |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1740 GTTTGATTGCCAGTCCCTTTG---GGCCCCCATGAACTCTTTAAAGTGCTT----GAG-G 1791 | | ||||||| || || |||||| || | ||| | | ||||| || | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1792 AAGTGC-GGATCGACATCATCAATGACGTTATACCACGCATCATTG 1836 | ||| ||| ||| ||||| |||||||||||||| | |||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTG 70456 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 96/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1656 TTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAAT 1715 |||||| ||| | || || ||||||||||| || ||| | || || | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1716 TTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTC 1775 |||||||| || |||||||||| || | ||| ||| | ||| || || | ||||| Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1776 TTTAAAGTGCTT 1787 || | | ||||| Sbjct 22882 TTAATAATGCTT 22893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8663752087900