Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004583.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3283 114 2e-22 seq22495 104 4e-19 seq3439 98.7 2e-17 seq5745 96.9 6e-17 seq4104 96.9 6e-17 seq77518 95.1 2e-16 seq33 93.3 7e-16 seq35612 89.7 9e-15 seq54129 87.8 3e-14 seq30129 87.8 3e-14 seq3059 87.8 3e-14 seq1993 87.8 3e-14 seq442 86.0 1e-13 seq80468 84.2 4e-13 seq6801 80.6 5e-12 seq815 80.6 5e-12 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 |||||| ||| ||||||| | || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1768 |||||||||||||||||||| |||||||| |||| ||| | ||||| | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1769 CCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGCGGGTCGACGTCATCAATGAC 1822 || | ||||| | | | |||| ||| |||| ||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1823 GTTAAACCAGGCGTCATT 1840 |||| |||| || ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 186/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 1575 TAGAGTGGGCTCTCGAGGGTGATGAAGATTGCATTCTTTAAAGCCCAATTTTTGAGTGCA 1634 ||||| ||| | |||| | | ||| | |||| | ||||| |||| |||| Sbjct 472 TAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATAT 413 Query 1635 GAATTCTTCTCTTCATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGG 1694 ||||| ||| ||| || || ||||||| | ||| ||||| |||||||| || Sbjct 412 GAATTGGACTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGT 353 Query 1695 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGC 1754 | |||| | |||| |||| ||||||||||||||| || ||||| |||| ||| | ||| Sbjct 352 ACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGC 293 Query 1755 CAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGCGGGTCG 1808 |||| || || || | ||||| | | | |||| ||| |||| ||| | Sbjct 292 CAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGG 233 Query 1809 ACGTCATCAATGACGTTAAACCAGGCGTCATT 1840 | |||||| ||||||||| |||| || ||||| Sbjct 232 ATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 187/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 1575 TAGAGTGGGCTCTCGAGGGTGATGAAGAT-TGCATTCTTTAAAGCCCAATTTTTGAGTGC 1633 ||||| ||| | |||| | | |||| | |||||| | || || |||| |||| Sbjct 1065 TAGAGGGGGGTGTCGACGAAG-TGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1634 AGAATTCTTCTCTTCATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAG 1693 ||||| ||| ||| || ||| ||||||| | | | ||||| ||||||| || Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAG 947 Query 1694 GAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTG 1753 | |||| | ||||| |||||||||||||||||||| || ||||| |||| || | || Sbjct 946 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATG 887 Query 1754 CCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGCGGGTC 1807 ||| | || || || | ||||| | | | |||| ||| |||| ||| Sbjct 886 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 827 Query 1808 GACGTCATCAATGACGTTAAACCAGGCGTCATT 1840 ||| ||||| ||||||||| |||| || ||||| Sbjct 826 GACATCATCGATGACGTTATACCATGCATCATT 794 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 144/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1705 ||| || ||| ||||||| | ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1706 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTG 1765 ||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1766 GGCCCCCATGAACTCCT--TAAAGTGCTTTAGGTA---ATGC-GGGTCGACGTCATCAAT 1819 || || ||||||| | ||| || |||| || | || || || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1820 GACGTTAAACCAGGCGTCATT 1840 ||||||| |||| ||||| || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 |||||| ||| ||||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTAT 1746 |||||||||||||||||||| || ||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 171/248 (69%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 1604 TGCATTCTTTAAAGCCCA--ATTTTTGAGTGCAGAATTCTTCTCTTCATCCAAAAACTCT 1661 |||||| | ||||| ||| ||||| | | ||||| ||| |||||| || || Sbjct 2479 TGCATTTTGTAAAGTCCACGATTTTCAATTT--GAATTTGAATCTAAATCCAAGAATGCT 2422 Query 1662 TTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTA 1718 ||||| | ||| || || |||||||| || | |||| ||||| ||||||||| Sbjct 2421 TTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTA 2362 Query 1719 ATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAAC 1778 |||||||||| || |||| |||| |||||| || |||| ||| || || | |||| Sbjct 2361 ATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAAC 2302 Query 1779 TCCTTAAAGTGCT------TTAGGTAATGCGGGTCGACGTCATCAATGACGTTAAACCAG 1832 | | | | |||| ||| ||| || ||| ||||||||||||||| |||| Sbjct 2301 TGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCAC 2242 Query 1833 GCGTCATT 1840 ||||| || Sbjct 2241 GCGTCGTT 2234 >seq33 Length=454124 Score = 93.3 bits (102), Expect = 7e-16 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1680 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1739 || |||||||| || | |||| ||||| |||| ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1740 TTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TT 1793 |||| |||||| ||||||| || | || | ||||| | | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1794 AGGTAATGCGGGTCGACGTCATCAATGACGTTAAACCAGGCGTCATTACTGTATACCCTT 1853 | ||| || ||||||||||||||||||| |||| ||||| || |||| || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1854 GGGCTCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAATGATCTGGCCCA 1909 | ||| ||| | | || | |||||||||||||| || || | ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq35612 Length=1588 Score = 89.7 bits (98), Expect = 9e-15 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 1575 TAGAGTGGGCTCTCGAGGGTGATGAAGATTGCATTCTTTAAAGCCCAATTTTTGAGTGCA 1634 ||||| ||| | |||| | | ||| |||||| | || || |||| |||| Sbjct 1405 TAGAGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATAT 1464 Query 1635 GAATTCTTCTCTTCATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGG 1694 ||||| ||| |||||| || ||||||| | ||| ||||| |||||||| || Sbjct 1465 GAATTGGACTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGT 1524 Query 1695 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGC 1754 | |||| | ||||| |||||||||||||||||||| || ||||| |||| || | ||| Sbjct 1525 ACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGC 1584 Query 1755 CA 1756 || Sbjct 1585 CA 1586 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1736 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1737 TATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1791 || |||| ||| | || |||| | || || || | ||||| | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1792 -TTAGGTAATGCGGGTCGACGTCATCAATGACGTTAAACCAGGCGTCATT 1840 ||| |||| ||| ||| || || ||||||||| |||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 |||||| ||| ||| ||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1756 |||||||||||||||||| | || ||||| |||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq3059 Length=182465 Score = 87.8 bits (96), Expect = 3e-14 Identities = 126/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 |||||| ||| ||||| | | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1768 |||||||||||||||| ||| || ||||| |||| ||| | | ||||| || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1769 CCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGCGGGTCGACGTCATCAATG 1820 || | ||||| | | | |||| ||| |||| ||| |||||| |||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1680 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1739 || |||||||| || | |||| ||||| ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1740 TTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TT 1793 |||| |||||| ||||| | ||| || | | ||||| | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1794 AGGTAATGCGGGTCGACGTCATCAATGACGTTAAACCAGGCGT 1836 | ||| || ||||||||||||||||||| |||| |||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGT 74241 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 |||||| || ||||||| | |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1768 |||||||||||||||||| || ||||| |||| ||| | ||| ||| ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1769 CCCCATGAACTCCTTAAAGTGCTTT 1793 || | ||||| | | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq80468 Length=4946 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1604 TGCATTCTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTTT 1663 |||||| | ||||| |||| |||| ||||| ||| || ||| || ||| Sbjct 4193 TGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAATGTTTT 4252 Query 1664 ATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTG 1723 |||| | ||| ||||| ||||||| || | |||| | ||||||||||||||||| || Sbjct 4253 ATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTG 4312 Query 1724 AACTGGCTTCCCGTATTTTGTATT 1747 ||| || || ||||| |||||||| Sbjct 4313 AACAGGTTTTCCGTACTTTGTATT 4336 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1705 |||||| ||| |||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1706 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1758 ||| |||||||||||||||||||| || ||||| |||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 137/198 (69%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 1649 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1708 || ||| ||| ||||||| | ||| ||||| |||||||| || | ||| | ||||| Sbjct 85451 ATTCAATAACGTTTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAAT 85393 Query 1709 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1768 ||||||||||||||| | || || |||| |||| ||| | | ||||| || || Sbjct 85392 CCCGCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGC 85333 Query 1769 CCCCATGAACTCCTTAAAGTGCT------TTAGGTAATGCGGGTCGACGTCATCAATGAC 1822 || | ||||| | | | | || ||| |||| | | |||||| || ||||| Sbjct 85332 GCCTACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGAC 85273 Query 1823 GTTAAACCAGGCGTCATT 1840 |||| |||| || ||||| Sbjct 85272 GTTATACCATGCATCATT 85255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676539913860