Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004607.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq5745 113 8e-22 seq3283 113 8e-22 seq33 113 8e-22 seq77518 109 1e-20 seq1993 109 1e-20 seq3439 107 3e-20 seq22495 96.9 6e-17 seq35612 86.0 1e-13 seq54129 84.2 4e-13 seq30129 84.2 4e-13 seq4104 82.4 1e-12 seq442 80.6 5e-12 seq3059 78.8 2e-11 seq953 78.8 2e-11 >seq5745 Length=45059 Score = 113 bits (124), Expect = 8e-22 Identities = 128/167 (77%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 ||||||||||| | | ||| ||| ||||| ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1788 |||| || || ||||| | | ||| || || ||||||| || ||| | | ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1789 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 |||| || || || ||||||||||||||||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1783 ||||||| |||| ||||| | | || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1784 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1842 | | ||| ||| |||||| || |||||||||||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1843 TTGGGACTCAGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAGTGATCTAGCCCA 1901 |||| | | | ||||| | ||| | ||||| ||||| || | ||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq33 Length=454124 Score = 113 bits (124), Expect = 8e-22 Identities = 128/167 (77%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 ||||||||||| || | ||| ||| ||||||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1788 |||| || || ||||||| | || | || | ||||| || ||| | | ||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1789 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 |||| || || |||||||||||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq77518 Length=14724 Score = 109 bits (120), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 ||||||||||| || | ||| ||| |||||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1788 |||| || || || |||| | ||| || || | ||||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1789 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 |||| || || ||| |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq1993 Length=81530 Score = 109 bits (120), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 ||||||||||| || | ||| ||| |||||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1788 |||| || || ||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1789 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 |||| || || |||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||| ||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1783 ||||||| ||||| ||||| | | || || || | ||||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1784 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1842 | | ||| ||| ||| ||||| |||||||||||||| || || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1843 TTGGGACTCAGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAGTGATCTAGCCCA 1901 |||| | | | ||||| | ||| | ||||| ||||| || | ||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| || | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1783 ||||||| |||| ||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1784 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 | | ||| ||| || |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1729 TACTTTGTGTTGGATTGCCA 1748 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1783 ||||||| |||| || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1784 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCA 1823 | | ||| ||| ||| || || |||||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| |||| ||||||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1774 ||||||| |||| ||||| | | || || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1668 GGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCC 1727 ||| ||||||||||| || | ||| |||| ||||||||||||||||||||||| || || Sbjct 20831 GGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 20772 Query 1728 GTACTTTG 1735 |||||||| Sbjct 20771 GTACTTTG 20764 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1666 TTGGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTC 1725 || || ||||||||||| || ||| |||| ||| |||||||||||||||||| || Sbjct 22775 TTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTT 22834 Query 1726 CCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1774 |||||||||| |||| ||| ||| | ||| || || | ||||| || Sbjct 22835 CCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTT 22883 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1774 || |||| |||| | ||||| | || || || | ||||| || Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 1669 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1728 || ||||||||||| | | ||| |||| ||||||||||||||||||| || || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1729 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAA-AGTGTTTG 1785 ||||||| ||| ||||| | | || | || | ||||| || ||| | | ||| Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1786 AGGA---AATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1832 | | ||| ||| |||||| || || ||||||||||| || || || Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686130783330