Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004608.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq5745 120 5e-24 seq3283 107 3e-20 seq77518 102 1e-18 seq3439 98.7 2e-17 seq22495 95.1 2e-16 seq1993 93.3 7e-16 seq54129 87.8 3e-14 seq815 78.8 2e-11 seq6801 77.0 6e-11 >seq5745 Length=45059 Score = 120 bits (132), Expect = 5e-24 Identities = 196/282 (70%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 1783 ATCCAAGTACTCTTTATAGGAGGACTTGGGACC---AGGGTTACACAGAAAGATGGTGGG 1839 ||| ||| || ||||||| || | | ||||| ||| || || | | ||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1840 GATACCACCTTTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTG 1899 || ||||||||||||| | || || |||||||| | || |||||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1900 CGCGCCCATGAATTCTTTGAAATGTT------TCAAATAATGTGGATCAACGTCATCGAT 1953 || || ||||| | || |||||| | |||||| |||| | |||||| || Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1954 GACGTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTTAGATCCAAATGGCCGCAAAG 2013 |||||| |||||||| ||||| || |||||||| || | ||||| | ||| | Sbjct 43687 GACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTAT 43746 Query 2014 ATAATTATGAGGACCTATGGCACGTGCCCACATGGTTTTACC 2055 ||||||||| ||||| | | ||||||||| | |||||||| Sbjct 43747 ATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 1783 ATCCAAGTACTCTTTATAGGAGGACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGAT 1842 ||||||| || ||||||||| | || ||||| || || || | ||| | || || Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1843 ACCACCTTTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGC 1902 || |||||||||| | || ||||||||||| | || | |||||| | || || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1903 GCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGAC 1956 ||| | ||| | || |||| ||| ||||||| ||| ||||| |||||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1957 GTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTTAGATCCA 2000 ||| |||||||| || || ||||| |||||| || | ||||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCA 2088 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 206/305 (68%), Gaps = 12/305 (4%) Strand=Plus/Minus Query 1783 ATCCAAGTACTCTTTATAGGAGGACTTGGGACC---AGGGTTACACAGAAAGATGGTGGG 1839 ||||||| | ||||||| || | | ||||| ||| || || || | ||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1840 GATACCACCTTTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTG 1899 || || |||||||||| | | || ||||||| | || ||||| |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1900 CGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGAT 1953 || || | ||| | || |||| || |||||| |||| || ||||| || Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1954 GACGTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTTAGATCCAAATGGCCGCAAAG 2013 |||||| ||||| || ||||| ||||||||||| || | ||||| | ||| | Sbjct 2254 GACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTAT 2195 Query 2014 ATAATTATGAGGACCTATGGCACGTGCCCACATGGTTTTACCCGTGCGACTATCTCCTTC 2073 ||||||||| ||||| | ||||||||| | |||||||| | ||| |||||| Sbjct 2194 ATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC---GATTCTAGGTCCTTC 2138 Query 2074 AATAA 2078 ||||| Sbjct 2137 AATAA 2133 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 1783 ATCCAAGTACTCTTTATAGGAGGACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGAT 1842 ||| ||| || ||||||||| | | || ||| | || || || | ||| | || || Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1843 ACCACCTTTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGC 1902 || |||||||||| | || || |||||||| |||| | ||||| | || || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1903 GCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGAC 1956 ||| | ||| | || |||| ||| ||||||| ||| || ||||||||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1957 GTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTTAGATCCA 2000 ||| |||||||| || || ||||| |||||| || | ||||| Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCA 768 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 1795 TTTATAGGAGGACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAAT 1854 ||||||||| | | || ||||| || || || | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1855 TTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTC 1914 || | || || |||||||| | || | |||||||| | || ||||| | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1915 TTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACGTTGTACCATGC 1968 || |||| ||| ||||||| ||| | ||||||||||||||| |||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1969 CTCGTTAGAGTATGTTTTGTCGTTTAGATCCAAA 2002 || || ||||| |||||| || | ||||||| Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAA 173 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 183/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 1814 CCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAATTTTAGTGGGCTTCCCGTAC 1873 ||||| || || || | ||| || || || ||||||||| | || || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1874 TTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTC------ 1927 || | || |||||||| | | ||| || | | ||| | || |||| || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1928 AAATAATGTGGATCAACGTCATCGATGACGTTGTACCATGCCTCGTTAGAGTATGTTTTG 1987 |||||| |||| |||||||| |||||||| ||||| || | ||| || |||||||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1988 TCGTTTAGATCCAAATGGCCGCAAAGATAATTATGAGGACCTATGGCACGTGCCCACATG 2047 || | ||||| | ||| | ||||||||| ||||| | | ||||| ||| | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 2048 GTTTTACCCGTGCGACTATCTCCTTCAATAA 2078 |||||||| | | | | ||||||||||| Sbjct 74163 GTTTTACCGATTCTAGAAGGTCCTTCAATAA 74133 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 129/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 1811 GGACCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAATTTTAGTGGGCTTCCCG 1870 || ||||| || || || | ||| | || || || |||||||||| | | || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1871 TACTTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTC--- 1927 ||||| | || | ||| |||| || ||||| | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1928 ---AAATAATGTGGATCAACGTCATCGATGACGTTGTACCATGCCTCGTTAGAGTATGTT 1984 ||||||| ||| || || ||||||||||| |||||| | || || ||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1985 TTG 1987 ||| Sbjct 2080 TTG 2078 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 145/212 (68%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 1795 TTTATAGGAGGACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAAT 1854 ||||||||| | | || ||||| || || || | || | || || || |||||||| Sbjct 85439 TTTATAGGATAA-TCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1855 TTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTC 1914 || | ||| || ||||||| | || | || ||||| | || ||||| | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1915 TTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACGTTGTACCATGC 1968 || ||| ||| ||||||| || ||||| ||||||||||| |||||||| Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1969 CTCGTTAGAGTATGTTTTGTCGTTTAGATCCA 2000 || || ||||| |||||| || | ||||| Sbjct 85260 ATCATTTGAGTACGTTTTGGAATTAAAATCCA 85229 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 6e-11 Identities = 200/305 (66%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 1783 ATCCAAGTACTCTTTATAGGAGGACTTGGGACC---AGGGTTACACAGAAAGATGGTGGG 1839 ||||||| || |||||||||| | | ||||| ||| | || || | ||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1840 GATACCACCTTTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTG 1899 || || |||||||||| | || || |||||||| | || |||||| ||| | || Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGTTGCGCTG 47179 Query 1900 CGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGAT 1953 || | || | || ||||||| |||||| |||| |||||||| || Sbjct 47180 TATGCATACAAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAAGGACGTCATCAAT 47239 Query 1954 GACGTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTTAGATCCAAATGGCCGCAAAG 2013 || || ||||| || ||||| || ||||||| || | ||||| | ||| | Sbjct 47240 GATATTATACCACGCGTCGTTCAAGAATGTTTTTGAATTCAAATCCATAAAGCCCTTTAT 47299 Query 2014 ATAATTATGAGGACCTATGGCACGTGCCCACATGGTTTTACCCGTGCGACTATCTCCTTC 2073 ||||||||| |||| | | ||||| | | |||||||| | | | | |||||| Sbjct 47300 ATAATTATGTAGACCCAACAAATGTGCCGAAACTGTTTTACCGATTCTAGAAGGTCCTTC 47359 Query 2074 AATAA 2078 ||||| Sbjct 47360 AATAA 47364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390