Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004611.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3439 78.8 2e-11 >seq3439 Length=62978 Score = 78.8 bits (86), Expect = 2e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 1680 ATTGCACAGGAAGATAGTGGGAATTCCACCTTTAATCATGACCGGCTTTCCGTACTTCGT 1739 |||||| || | |||| | ||||| || |||||||| || || ||||||||||| | Sbjct 955 ATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGC 896 Query 1740 GTTGCTTTGGCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATA 1793 |||| || || | ||||| || || | ||| | || | | |||| ||| ||| Sbjct 895 GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATA 836 Query 1794 GTGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTGCTATAGACCTTTGGG-- 1851 | ||| || ||||| |||||||| ||||| |||||||| | || ||| || Sbjct 835 ATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGAA 778 Query 1852 CTCAGATCAAGATGTCCACACAAGTAATTGTGTGGTCCTAAGCACCGAGCCCA 1904 | | ||| | | ||| | ||| |||||||| ||||| | |||||||| Sbjct 777 TTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8647767305450