Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004613.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq3439 105 1e-19 seq5745 82.4 1e-12 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 178/251 (71%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTACTGCCCA-GTCTTTTAATGCTGAATTCTTTTCCTCGTCCAAGT 1663 |||||||||||| | || | ||| || || ||| |||||| ||| |||||| Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA-TGAATTGGACTCCAAATCCAAGA 2304 Query 1664 ACTCTTTATACGAT-GATGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCT 1722 || |||||| ||| ||| || || |||||||| || | ||| |||| ||||| ||| Sbjct 2303 ACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCT 2245 Query 1723 TTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATG 1782 |||||||| | || ||||||||||||| ||| ||||||| || || || || | | Sbjct 2244 TTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACG 2185 Query 1783 AATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTAC 1836 || | || | | |||| ||| ||| | || ||||| || |||||||| ||| Sbjct 2184 AACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATAC 2125 Query 1837 CATGCATCATT 1847 ||||||||||| Sbjct 2124 CATGCATCATT 2114 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 174/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 1606 AATTCTGCATTCTTTACTGCCCA-GTCTTTTAATGCTGAATTCTTTTCCTCGTCCAAGTA 1664 ||||||||||| | || | ||| || || ||| |||||| ||| || ||| | Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA-TGAATTGGACTCCAAATCTAAGAA 983 Query 1665 CTCTTTATACGATGATGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTT 1724 | |||||| ||| || || || ||||||| || | ||| |||| ||||| ||||| Sbjct 982 CGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 923 Query 1725 AATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAA 1784 |||||| | || || |||||||||| |||| ||||||| || || || || | ||| Sbjct 922 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAA 863 Query 1785 TTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCA 1838 | || | | |||| ||| ||| | || || ||||| |||||||| ||||| Sbjct 862 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCA 803 Query 1839 TGCATCATT 1847 ||||||||| Sbjct 802 TGCATCATT 794 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 195/290 (67%), Gaps = 15/290 (5%) Strand=Plus/Plus Query 1657 TCCAAGTACTCTTTATACGATGATGTTGGGCCT---GGATTGCAGAGGAAGATTGTTGGG 1713 || ||| || ||||||| ||| | ||| || |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1714 ATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGG 1773 ||||||||||||||||| | || || |||||||||| || ||||||| | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1774 GCCCCCATGAATTCTT--TAAAGTGCTTTAGATA------GTGGGGGTCTACGTCATCAA 1825 || || ||||| | || ||| || |||| || ||| || | |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1826 TGACGTTGTACCATGCATCATTACTGTACACCTTTGGACTCAAGT-CAAGGTGCCCACAC 1884 ||||||| |||||||| || || || || | | |||| | || ||||| Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCA-TT 43744 Query 1885 AAATAATTATGTGGGCCTAAAGACCTGGCCCACATTGTCTTTCCTGTTCT 1934 | |||||||||||| || || || | ||||| | ||| || || |||| Sbjct 43745 ATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCT 43794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676539913860