Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_004614.1
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
seq4104 100 5e-18
seq3283 96.9 6e-17
seq22495 93.3 7e-16
seq35612 91.5 3e-15
seq30129 91.5 3e-15
seq3059 91.5 3e-15
seq442 91.5 3e-15
seq77518 89.7 9e-15
seq5745 87.8 3e-14
seq3439 87.8 3e-14
seq33 87.8 3e-14
seq80468 84.2 4e-13
seq54129 80.6 5e-12
seq6801 80.6 5e-12
seq1993 77.0 6e-11
>seq4104
Length=64936
Score = 100 bits (110), Expect = 5e-18
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
|||||||||| |||||| | ||| |||||| |||||||| || | |||| | |||||
Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTAT 1760
|||||||||||||||||||| |||||||| |||| ||
Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761
>seq3283
Length=49157
Score = 96.9 bits (106), Expect = 6e-17
Identities = 140/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
|||||||||| |||||| | || ||||| |||||||| || | |||| | |||||
Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782
|||||||||||||||||||| || ||||| |||| ||| | ||||| | | || ||
Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192
Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836
|| | ||| | | | | |||| ||| || | ||| |||||| || ||||
Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132
Query 1837 GTTGAACCAGGCCTCATT 1854
||| |||| || |||||
Sbjct 2131 GTTATACCATGCATCATT 2114
>seq22495
Length=567
Score = 93.3 bits (102), Expect = 7e-16
Identities = 139/198 (70%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
||| ||||| |||||| | ||| ||||| |||||||| || | |||| | ||||
Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782
|||| ||||||||||||||| |||||||| |||| ||| | ||||||| | || ||
Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279
Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836
|| | ||| | | | | |||| ||| || | ||| || |||||| ||||
Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219
Query 1837 GTTGAACCAGGCCTCATT 1854
||| |||| || |||||
Sbjct 218 GTTATACCATGCATCATT 201
>seq35612
Length=1588
Score = 91.5 bits (100), Expect = 3e-15
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
||||||||| |||||| | ||| ||||| |||||||| || | |||| | |||||
Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770
|||||||||||||||||||| |||||||| |||| || | |||||
Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586
>seq30129
Length=3650
Score = 91.5 bits (100), Expect = 3e-15
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
|||||||||| ||| || | ||| ||||| |||||||| || | |||| | |||||
Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770
|||||||||||||||||| | |||||||| |||| ||| | |||||
Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450
>seq3059
Length=182465
Score = 91.5 bits (100), Expect = 3e-15
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
|||||||||| ||||| | ||| ||||| |||||||| || | |||| | |||||
Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772
|||||||||||||||| ||| |||||||| |||| ||| | | |||||
Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338
>seq442
Length=237535
Score = 91.5 bits (100), Expect = 3e-15
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
||||||||| |||||| | |||| ||||| |||||||| || |||| | |||||
Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782
|||||||||||||||||| |||||||| |||| ||| | ||| ||| | ||| ||
Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869
Query 1783 CCCCATGAATTCCTTAAAGTGCTTT 1807
|| | ||| | | | | ||||||
Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894
>seq77518
Length=14724
Score = 89.7 bits (98), Expect = 9e-15
Identities = 109/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719
||||||||| |||||||| | ||| || || |||||||| || | |||| ||
Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375
Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779
||| ||||||||||||||||||| ||| |||| |||| |||||| || |||| | |||
Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315
Query 1780 GGCCCCCATGAATTCCTTAAAGTGCTTT 1807
|| || | ||| | | | | ||||||
Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTT 2287
>seq5745
Length=45059
Score = 87.8 bits (96), Expect = 3e-14
Identities = 99/132 (75%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719
||| |||||| |||||||| | ||| || || |||||||| | | |||| ||
Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566
Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779
||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | | |||
Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626
Query 1780 GGCCCCCATGAA 1791
|| || |||||
Sbjct 43627 TGCTCCTATGAA 43638
>seq3439
Length=62978
Score = 87.8 bits (96), Expect = 3e-14
Identities = 138/198 (70%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
||| |||||| |||||| | | | ||||| ||||||| || | |||| | |||||
Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782
|||||||||||||||||||| |||||||| |||| || | ||||| | | || ||
Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872
Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836
|| | ||| | | | | |||| ||| || | ||| ||| ||||| ||||
Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812
Query 1837 GTTGAACCAGGCCTCATT 1854
||| |||| || |||||
Sbjct 811 GTTATACCATGCATCATT 794
>seq33
Length=454124
Score = 87.8 bits (96), Expect = 3e-14
Identities = 87/112 (78%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT--GGATTGCAGAGGAAGATAGTGGGA 1720
||| |||||| |||||||| | | || || |||||||| || | |||| |||
Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276
Query 1721 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772
|| |||| ||||||||||||||| |||||||| |||| |||||| |||||||
Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGT 403224
>seq80468
Length=4946
Score = 84.2 bits (92), Expect = 4e-13
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722
|| |||||| |||||| | ||| ||||| ||||||| || | |||| | |||||
Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297
Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATT 1761
|||||||||||| ||||| || |||||||| ||||||||
Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336
>seq54129
Length=2260
Score = 80.6 bits (88), Expect = 5e-12
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 1691 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1750
||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| ||||||
Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201
Query 1751 TATTTTGTATTTGATTGCCAGT 1772
|| |||| ||| | || ||||
Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179
>seq6801
Length=49729
Score = 80.6 bits (88), Expect = 5e-12
Identities = 86/113 (76%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719
|||||||||| ||||||| ||| || || ||| |||| || | |||| ||
Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119
Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772
||| |||||||||||||||||||| || ||||| |||| |||||| ||| |||
Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172
>seq1993
Length=81530
Score = 77.0 bits (84), Expect = 6e-11
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1694 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1753
|| |||||||| || | |||| ||||| ||| |||||||||||||||| || |||||
Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344
Query 1754 TTTGTATTTGATTGCCA 1770
|||| |||||| |||||
Sbjct 74343 TTTGCATTTGACTGCCA 74327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8718100348230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |