Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004614.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq4104 100 5e-18 seq3283 96.9 6e-17 seq22495 93.3 7e-16 seq35612 91.5 3e-15 seq30129 91.5 3e-15 seq3059 91.5 3e-15 seq442 91.5 3e-15 seq77518 89.7 9e-15 seq5745 87.8 3e-14 seq3439 87.8 3e-14 seq33 87.8 3e-14 seq80468 84.2 4e-13 seq54129 80.6 5e-12 seq6801 80.6 5e-12 seq1993 77.0 6e-11 >seq4104 Length=64936 Score = 100 bits (110), Expect = 5e-18 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| |||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTAT 1760 |||||||||||||||||||| |||||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| |||||| | || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 |||||||||||||||||||| || ||||| |||| ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836 || | ||| | | | | |||| ||| || | ||| |||||| || |||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1837 GTTGAACCAGGCCTCATT 1854 ||| |||| || ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||| ||||| |||||| | ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 |||| ||||||||||||||| |||||||| |||| ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836 || | ||| | | | | |||| ||| || | ||| || |||||| |||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1837 GTTGAACCAGGCCTCATT 1854 ||| |||| || ||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||||||||| |||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770 |||||||||||||||||||| |||||||| |||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| ||| || | ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770 |||||||||||||||||| | |||||||| |||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq3059 Length=182465 Score = 91.5 bits (100), Expect = 3e-15 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| ||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772 |||||||||||||||| ||| |||||||| |||| ||| | | ||||| Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338 >seq442 Length=237535 Score = 91.5 bits (100), Expect = 3e-15 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||||||||| |||||| | |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 |||||||||||||||||| |||||||| |||| ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1783 CCCCATGAATTCCTTAAAGTGCTTT 1807 || | ||| | | | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq77518 Length=14724 Score = 89.7 bits (98), Expect = 9e-15 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719 ||||||||| |||||||| | ||| || || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779 ||| ||||||||||||||||||| ||| |||| |||| |||||| || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1780 GGCCCCCATGAATTCCTTAAAGTGCTTT 1807 || || | ||| | | | | |||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTT 2287 >seq5745 Length=45059 Score = 87.8 bits (96), Expect = 3e-14 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719 ||| |||||| |||||||| | ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779 ||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1780 GGCCCCCATGAA 1791 || || ||||| Sbjct 43627 TGCTCCTATGAA 43638 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||| |||||| |||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 |||||||||||||||||||| |||||||| |||| || | ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1783 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCTATGAT 1836 || | ||| | | | | |||| ||| || | ||| ||| ||||| |||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1837 GTTGAACCAGGCCTCATT 1854 ||| |||| || ||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq33 Length=454124 Score = 87.8 bits (96), Expect = 3e-14 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT--GGATTGCAGAGGAAGATAGTGGGA 1720 ||| |||||| |||||||| | | || || |||||||| || | |||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1721 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772 || |||| ||||||||||||||| |||||||| |||| |||||| ||||||| Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGT 403224 >seq80468 Length=4946 Score = 84.2 bits (92), Expect = 4e-13 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 || |||||| |||||| | ||| ||||| ||||||| || | |||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATT 1761 |||||||||||| ||||| || |||||||| |||||||| Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1691 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1750 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1751 TATTTTGTATTTGATTGCCAGT 1772 || |||| ||| | || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAACTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719 |||||||||| ||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1720 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT 1772 ||| |||||||||||||||||||| || ||||| |||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq1993 Length=81530 Score = 77.0 bits (84), Expect = 6e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1694 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1753 || |||||||| || | |||| ||||| ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1754 TTTGTATTTGATTGCCA 1770 |||| |||||| ||||| Sbjct 74343 TTTGCATTTGACTGCCA 74327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230