Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004618.1 Length=2787 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 8e-22 seq3439 109 1e-20 seq22495 96.9 6e-17 seq54129 89.7 9e-15 seq3059 87.8 3e-14 seq953 86.0 1e-13 seq20728 78.8 2e-11 seq815 77.0 6e-11 seq33 77.0 6e-11 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| || | ||| | ||||| |||||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 ||||| | ||| ||||| | ||||| || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACT 1901 ||| ||||| |||| |||||| || |||||||| ||||| || ||| |||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1902 TTTGGACTGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCA 1960 || | | | | || | | ||| | || |||||||| || |||||||| ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1735 GATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTCG 1794 ||||||| || | ||| | ||||| |||||||||||||||| || || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1795 TGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT------TTAGAT 1848 |||| ||||| | ||||| || || | ||||| || | | |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1849 AATGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACTTTTGGAC 1908 ||| |||| ||| ||||| |||||||| ||||| || ||| |||| ||| | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1909 TGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCA 1960 | | || | | ||| | || |||||||| || |||||||| ||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| || | ||| | |||| |||| ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 ||||| | ||| ||||||| ||||| || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACT 1901 ||| ||||| |||| || |||||| |||||||| ||||| || ||| |||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1902 TTTGGACTGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACG 1954 || | | | | || | | ||| | || |||||||| || |||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACG 138 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| || | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 ||||| | ||| || |||| |||| || || | ||||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCA 1882 ||| ||||| |||| ||| || || |||||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq3059 Length=182465 Score = 87.8 bits (96), Expect = 3e-14 Identities = 109/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| || | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 || || | ||| | ||||| ||||| || || | ||||| || | | |||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATG 1871 ||| ||||| |||| |||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 162/239 (68%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| | | ||| | ||||| ||||||||||||||||| | || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 ||||| | ||| ||||| | ||||| | || | ||||| || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACT 1901 ||| ||||| |||| |||||| || || ||||| ||||| || ||| |||| | Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1902 TTTGGACTGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCA 1960 || | | | | || | | || | || |||||||| || |||||||| ||||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/137 (73%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 1755 GGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCACGC 1814 ||||| || ||||||||||||| || || |||||||| | ||| |||| || ||| Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1815 TGGGCCCCCATGAACTCTTTAAAGTGCT------TTAGATAATGCGGATCGACGTCATCA 1868 || || || | ||||| || | | |||| ||| ||||| |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1869 ATGACGTTGTACCAAGC 1885 |||||||| || || || Sbjct 1561 ATGACGTTATATCATGC 1577 >seq815 Length=151552 Score = 77.0 bits (84), Expect = 6e-11 Identities = 115/164 (70%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 1728 GGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 || || |||||||| || | || | ||||| ||||||||||||||| || || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1788 TACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1842 ||||| | ||| | ||||| ||||| || || | ||||| || | | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1843 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGC 1885 ||| ||||| | || |||||| || |||||||| ||||| || Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 >seq33 Length=454124 Score = 77.0 bits (84), Expect = 6e-11 Identities = 114/162 (70%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1730 CCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTA 1789 ||| |||||||| || | ||| ||||| |||| ||||||||||| || || ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1790 CTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1843 ||| | || ||||||| | ||| | || | ||||| || | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1844 TAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGC 1885 || |||| ||| |||||||||||||||||| ||||| || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 403142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8797777915200