Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004625.1 Length=2802 Score E Sequences producing significant alignments: (Bits) Value seq5745 118 2e-23 seq3283 118 2e-23 seq3439 114 2e-22 seq953 107 3e-20 seq22495 98.7 2e-17 seq54129 95.1 2e-16 seq77518 93.3 7e-16 seq1993 93.3 7e-16 seq33 86.0 1e-13 seq815 84.2 4e-13 seq3059 80.6 5e-12 seq442 78.8 2e-11 seq30129 77.0 6e-11 >seq5745 Length=45059 Score = 118 bits (130), Expect = 2e-23 Identities = 192/276 (70%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 1716 CTTTATAGGACGAATTGGGGCCC---GGATTGCATAAGAAGATGGTGGGAATCCCACCTT 1772 ||||||| || ||| || ||| |||||||| | | ||| ||||||||||||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1773 TAATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGA 1832 ||||||||| || || ||||| |||| ||||| ||||||| | ||| || || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1833 ATTCTTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACC 1886 | | || |||| | ||| |||| || | ||| ||||||||||| |||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1887 ATGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAGTTATGTG 1946 |||||||||| || ||| | || | | || ||||| || || ||| ||||||| Sbjct 43698 ATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTG 43757 Query 1947 GGCCCAGAGATCGGGCCCACATCGTCTTCCCGGTTC 1982 | |||| || || ||||| | || || ||| ||| Sbjct 43758 GACCCAACGAACGTGCCCAAACTGTTTTACCGATTC 43793 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||||||||| || || || |||||||| | | ||| | |||||||| |||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 ||||| || || ||||| |||| || | ||||||| ||| || || || | ||| | Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1837 TTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGC 1890 || |||||| ||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1891 GTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCC 1950 || ||||| || | |||| | | ||||| ||| || ||||| |||||||| Sbjct 2119 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 2060 Query 1951 CAGAGATCGGGCCCA 1965 | || || ||||| Sbjct 2059 TAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 114 bits (126), Expect = 2e-22 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||||||||| | | || || ||||||| | | ||| | |||||||| |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 ||||| || |||||||| |||| ||| | ||||||| ||| || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1837 TTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGC 1890 || |||||| ||| ||||| ||| || || || |||||||| |||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1891 GTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCC 1950 || ||||| || | |||| | | ||||| ||| || ||||| |||||||| Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1951 CAGAGATCGGGCCCA 1965 | || || ||||| Sbjct 739 TAATGAACGAGCCCA 725 >seq953 Length=224861 Score = 107 bits (118), Expect = 3e-20 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 1706 TCTAGGTATTCTTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATC 1765 |||| | || ||||||||| ||| || || |||||||| || | ||| | |||||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1766 CCACCTTTAATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCC 1825 || |||||||||||||| | |||||||| |||| || ||||||| ||| || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1826 CCCATGAATTCTTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACG 1879 || | ||| | || ||| || ||| ||||| ||| |||||||| || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1880 TTGTACCATGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAG 1939 || |||||||| || ||||| || | || | | | ||||| || || ||| Sbjct 1993 TTATACCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAG 2052 Query 1940 TTATGTGGGCCCAGAGATCGGGCCCA 1965 || |||||||| | || || ||||| Sbjct 2053 TTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 1706 TCTAGGTATTCTTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATC 1765 |||| | || ||||||||| ||| || || |||||||| | | ||| | ||||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1766 CCACCTTTAATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCC 1825 || | ||||||||||| || |||||||| |||| || | ||||| | || || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1826 CCCATGAATTCTTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACG 1879 || | ||| | || |||||| ||| ||||| ||| | ||| || |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1880 TTGTACCATGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAG 1939 || |||||||| || ||||| || | |||| | | ||||| ||| || ||| Sbjct 217 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAG 158 Query 1940 TTATGTGGGCC 1950 || |||||||| Sbjct 157 TTGTGTGGGCC 147 >seq54129 Length=2260 Score = 95.1 bits (104), Expect = 2e-16 Identities = 131/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1733 GGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCG 1792 || || |||||||| | | ||| | |||||||| |||||||||||||| || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1793 TATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCT----- 1847 || |||| || | || || | | || || || | ||| | || | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1848 -TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATATC 1906 ||| ||||| ||| || ||||| |||||||| |||||| | || ||||| ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1907 TTGG 1910 |||| Sbjct 2080 TTGG 2077 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 188/279 (67%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 1713 ATTCTTTATAGGACGAATTGGGGCCC---GGATTGCATAAGAAGATGGTGGGAATCCCAC 1769 || ||||||| || ||| || ||| |||||||| | | ||| |||||||| | Sbjct 2426 ATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGC 2367 Query 1770 CTTTAATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCA 1829 |||||||||||| | ||| |||| |||| ||||| || || | ||||| || || | Sbjct 2366 CTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTA 2307 Query 1830 TGAATTCTTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGT 1883 ||| | || |||||| ||| |||| || || || ||||||||||| | Sbjct 2306 CGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTAT 2247 Query 1884 ACCATGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAGTTAT 1943 |||| |||||||| || ||| | || | || ||||| || || ||| |||| Sbjct 2246 ACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTAT 2187 Query 1944 GTGGGCCCAGAGATCGGGCCCACATCGTCTTCCCGGTTC 1982 |||| |||| | || ||||| | || || ||| ||| Sbjct 2186 GTGGACCCAACTAACGTGCCCAAACTGTTTTACCGATTC 2148 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 172/253 (68%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 1736 CCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTAT 1795 || |||||||| | | ||| |||||||| |||||||||||| || || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1796 TTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCT------TT 1849 |||| ||||| ||||||| ||||| || | | ||| | || |||| | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1850 AGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATATCTTG 1909 | |||| || ||||| ||||||||||| ||||| |||| ||| || ||| | || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1910 GGAGACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATC 1969 | | || ||||| || || ||| |||||||| |||| || || | ||| | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 1970 GTCTTCCCGGTTC 1982 || || ||| ||| Sbjct 74163 GTTTTACCGATTC 74151 >seq33 Length=454124 Score = 86.0 bits (94), Expect = 1e-13 Identities = 174/258 (67%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1716 CTTTATAGGACGAATTGGGGCCC--GGATTGCATAAGAAGATGGTGGGAATCCCACCTTT 1773 ||||||| ||| | | || ||| |||||||| | | ||| |||||||| | ||| Sbjct 403324 CTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTT 403265 Query 1774 AATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAA 1833 |||||||| || |||||||| |||| ||||| ||||| | | || | || | ||| Sbjct 403264 AATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAA 403205 Query 1834 TTCTTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCA 1887 | || |||| | ||| |||| || ||||| ||||||||||| ||||| Sbjct 403204 CTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCA 403145 Query 1888 TGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCCACATAGATAGTTATGTGG 1947 |||||||| || ||| | | | | || ||||| || || || |||||||| Sbjct 403144 CGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGG 403085 Query 1948 GCCCAGAGATCGGGCCCA 1965 |||| || || ||||| Sbjct 403084 ACCCAACGAACGTGCCCA 403067 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 139/200 (70%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||||||||| ||| || || |||||||| | | || | |||||||| |||||||| Sbjct 85439 TTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 |||| ||| ||| |||| |||| || | | ||| | || || || || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1837 TTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGC 1890 || ||| || ||| ||||| | | |||||||| |||||||| |||||||| Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1891 GTCGTTTGAATATATCTTGG 1910 || ||||| || | |||| Sbjct 85260 ATCATTTGAGTACGTTTTGG 85241 >seq3059 Length=182465 Score = 80.6 bits (88), Expect = 5e-12 Identities = 117/166 (70%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||||| ||| ||| || || |||||||| | | ||| | |||||||| |||||||| Sbjct 20435 TTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20376 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 |||||| || |||||||| |||| || | | ||| | || || || || | ||| | Sbjct 20375 TTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTG 20316 Query 1837 TTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATG 1876 || |||||| ||| ||||| ||| |||||||||||| Sbjct 20315 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||||||||| |||| || || |||||||| | ||| | |||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 ||||| | |||||||| |||| || | ||| | | |||||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1837 TTTGAAATGCT------TTAGATAATGCGGGTCTACGTCGTCAATGACGTTGTACCATGC 1890 || |||||| ||| ||||| || ||||| || || ||||| |||| ||| Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1891 GTCGTTTGAATA 1902 || ||||| || Sbjct 22940 ATCATTTGAGTA 22951 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 96/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1717 TTTATAGGACGAATTGGGGCCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAAT 1776 ||| ||||| ||| || || |||||||| | | ||| | |||||||| |||||||| Sbjct 2355 TTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2414 Query 1777 TTGAATGGGCTTTCCGTATTTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTC 1836 ||||| | |||||||| |||| || | ||||||| ||| || || || | ||| | Sbjct 2415 TTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2474 Query 1837 TTTGAAATGCTT 1848 || ||||||| Sbjct 2475 TTGATAATGCTT 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8845730919825