Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004626.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq5745 113 8e-22 seq77518 107 3e-20 seq3283 105 1e-19 seq3439 102 1e-18 seq33 98.7 2e-17 seq22495 91.5 3e-15 seq54129 80.6 5e-12 seq3059 78.8 2e-11 seq35612 77.0 6e-11 seq4104 77.0 6e-11 seq953 77.0 6e-11 >seq5745 Length=45059 Score = 113 bits (124), Expect = 8e-22 Identities = 229/335 (68%), Gaps = 15/335 (4%) Strand=Plus/Plus Query 1604 AATTCCGCATTCTTTATAGCCCACTCTTT-TAATGCTGAATTCTTTTCTTCGTCCAAGTA 1662 ||||| ||||| | || || | || ||| |||| |||||| ||| || ||| | Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAA 43515 Query 1663 CTCTTTATATGATGATGTTGG---CCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACC 1719 | ||||||| ||| | ||| ||| |||||||||| | |||| ||| || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1720 TTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1779 ||||||||||| |||||| ||||| || | || ||||| | | ||| || || || Sbjct 43576 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTAT 43635 Query 1780 GAATTCTT--TAAAGTGCTTTAGATA------GTGGGGGTCTACGTCATCAATGACGTTA 1831 ||| | || ||| || |||| || ||| || | |||||||||||||||| Sbjct 43636 GAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGTTA 43693 Query 1832 TACCAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTA 1891 ||||| || || || ||| ||| | | ||| ||| | | || | ||||||| Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1892 TGTGGTCCCAGTGACCTGGCCCACATTGTTTTACC 1926 ||||| |||| || | ||||| | ||||||||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq77518 Length=14724 Score = 107 bits (118), Expect = 3e-20 Identities = 226/335 (67%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 1603 GAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTCGTCCAAGTA 1662 |||||| ||||| | || || |||| |||| | |||||| ||| |||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1663 CTCTTTATATGATGATGTTGG---CCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACC 1719 ||||||| ||| | ||| ||| ||||||||||| | |||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1720 TTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1779 ||||||||||| || ||| |||| || | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1780 GAATTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCTACGTCATCAATGACGTTA 1831 ||| | || | | |||| ||| ||| ||| || || ||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1832 TACCAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTA 1891 ||||| || || || |||| ||| | ||| ||| | | || | ||||||| Sbjct 2247 TACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTA 2188 Query 1892 TGTGGTCCCAGTGACCTGGCCCACATTGTTTTACC 1926 ||||| |||| | | ||||| | ||||||||| Sbjct 2187 TGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 11/215 (5%) Strand=Plus/Minus Query 1655 TCCAAGTACTCTTTATATGAT-GATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGAT 1713 |||||| || |||||| ||| ||| || || ||||||||||| | |||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1714 TCCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1773 || ||||||||||||| |||||||||||| || | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1774 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1827 || | ||| | || | | |||| ||| ||| | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1828 GTTATACCAAGCATCATTACTGTATAC-TTTTGGA 1861 ||||||||| |||||||| || ||| ||||||| Sbjct 2131 GTTATACCATGCATCATT--TGAGTACGTTTTGGA 2099 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 1655 TCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATT 1714 || ||| || |||||| ||| || || || |||||||||| | |||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1774 || ||||||||||||| |||||| ||||| || | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1775 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACG 1828 || | ||| | || | | |||| ||| ||| | || || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1829 TTATACCAAGCATCATTACTGTATAC-TTTTGGA 1861 |||||||| |||||||| || ||| ||||||| Sbjct 810 TTATACCATGCATCATT--TGAGTACGTTTTGGA 779 >seq33 Length=454124 Score = 98.7 bits (108), Expect = 2e-17 Identities = 222/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 1603 GAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTCGTCCAAGTA 1662 |||||| ||||||| || || |||| ||| | |||||| ||| || ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1663 CTCTTTATATGATGATGTTGG--CCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCT 1720 | ||||||| || | ||| ||| ||||||||||| | |||| ||| || || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1721 TTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1780 |||||||||| |||||| ||||| || | || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1781 AATTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCTACGTCATCAATGACGTTAT 1832 || | || | | || | ||| ||| ||| || ||||||||||||||||||| Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTAT 403149 Query 1833 ACCAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTAT 1892 |||| || || || |||| | | | | ||| ||| | | || | ||||||| Sbjct 403148 ACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTAT 403089 Query 1893 GTGGTCCCAGTGACCTGGCCCACATTGTTTT 1923 |||| |||| || | ||||| | |||||| Sbjct 403088 GTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 1666 TTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAAT 1725 |||||| ||| | || || ||||||||||| | |||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1726 TTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1785 ||||| |||||| ||||| || | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1786 TTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGC 1839 || | | |||| ||| ||| | || | |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1840 ATCATTACTGTATAC-TTTTGGA 1861 |||||| || ||| ||||||| Sbjct 206 ATCATT--TGAGTACGTTTTGGA 186 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 130/186 (70%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 1682 GGCCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1741 || || ||||||||||| | |||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1796 || || | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACT 1855 ||| ||| | || || || || |||||||||||||| ||||||| |||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1856 TTTGGA 1861 |||||| Sbjct 2081 TTTGGA 2076 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1655 TCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATT 1714 |||||| || ||||| ||| | || || ||||||||||| | |||| |||| || Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1774 || |||||||||||||||||||| ||||| || | ||| | ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1775 CCCATGAATTCTTTAAAGTGCTT 1797 || | ||| | || | | ||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTT 20304 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1655 TCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATT 1714 |||||| | |||||| ||| | || || ||||||||||| | |||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCA 1761 || ||||||||||||| |||||| ||||| || | |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1655 TCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATT 1714 |||||| || |||||| ||| | || || ||||||||||| | |||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1715 CCACCTTTAATTTGAATTGGTTTCCCGTATTT 1746 || ||||||||||||| |||||| ||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq953 Length=224861 Score = 77.0 bits (84), Expect = 6e-11 Identities = 166/249 (67%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1603 GAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTCGTCCAAGTA 1662 |||||| ||||| | || || ||| ||| | |||||| ||| || ||| | Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAA 1820 Query 1663 CTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 |||||| ||| | || || |||||||||| | |||| |||| || || ||||| Sbjct 1821 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTT 1880 Query 1723 AATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1782 ||||||||||| ||| ||||| || | ||| ||||| | | || | || | ||| Sbjct 1881 AATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAA 1940 Query 1783 TTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCA 1836 | || | | | || ||| ||| | || ||||| || || ||||||||||| Sbjct 1941 CTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCA 2000 Query 1837 AGCATCATT 1845 |||||||| Sbjct 2001 TGCATCATT 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654161218430