Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004627.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq3283 107 3e-20 seq3439 104 4e-19 seq5745 100 5e-18 seq22495 96.9 6e-17 seq77518 93.3 7e-16 seq54129 87.8 3e-14 seq4104 84.2 4e-13 seq35612 82.4 1e-12 seq953 82.4 1e-12 seq30129 78.8 2e-11 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 1658 TCCAAGTACTCTTTGTATGAT-GATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGAT 1716 |||||| || ||| || ||| ||| ||||| ||||||||||| | |||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1717 TCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1776 || ||||||||||||| ||||||||||||||| | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1777 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1830 || | ||| | || | | |||| ||| ||| | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1831 GTTATACCAAGCATCATT 1848 ||||||||| |||||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1658 TCCAAGTACTCTTTGTATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGATT 1717 || ||| || ||| || ||| || ||||| |||||||||| | |||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1718 CCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1777 || ||||||||||||| |||||| |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1778 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACG 1831 || | ||| | || | | |||| ||| ||| | || || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1832 TTATACCAAGCATCATT 1848 |||||||| |||||||| Sbjct 810 TTATACCATGCATCATT 794 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 226/335 (67%), Gaps = 15/335 (4%) Strand=Plus/Plus Query 1607 AATTCCGCATTCTTTATAGCCCACTCTTT-TAATGCTGAATTCTTTTCTTCGTCCAAGTA 1665 ||||| ||||| | || || | || ||| |||| |||||| ||| || ||| | Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAA 43515 Query 1666 CTCTTTGTATGATGATGTTGGTCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1722 | |||| || ||| | ||| || |||||||||| | |||| ||| || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1723 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1782 ||||||||||| |||||| |||||||| | || ||||| | | ||| || || || Sbjct 43576 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTAT 43635 Query 1783 GAATTCTT--TAAAGTGCTTTAGATA------GTGGGGGTCTACGTCATCAATGACGTTA 1834 ||| | || ||| || |||| || ||| || | |||||||||||||||| Sbjct 43636 GAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGTTA 43693 Query 1835 TACCAAGCATCATTACTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTA 1894 ||||| || || || || || | | ||| ||| | | || | ||||||| Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1895 TGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1929 ||||| |||| || | ||||| | ||||||||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1685 GGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1744 ||||| ||||||||||| | |||| || | || || | ||||||||||| |||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1745 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1799 ||||| | ||| ||||||| | || || || | ||| | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1800 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATT 1848 ||| ||| | || | |||||| |||||||||||||| |||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 223/335 (67%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 1606 GAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTCGTCCAAGTA 1665 |||||| ||||| | || || |||| |||| | |||||| ||| |||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1666 CTCTTTGTATGATGATGTTGGTCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1722 |||| || ||| | ||| || ||||||||||| | |||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1723 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1782 ||||||||||| || ||| ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1783 GAATTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCTACGTCATCAATGACGTTA 1834 ||| | || | | |||| ||| ||| ||| || || ||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1835 TACCAAGCATCATTACTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTA 1894 ||||| || || || ||| || | ||| ||| | | || | ||||||| Sbjct 2247 TACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTA 2188 Query 1895 TGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1929 ||||| |||| | | ||||| | ||||||||| Sbjct 2187 TGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1685 GGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1744 ||||| ||||||||||| | |||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1745 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1799 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1800 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATT 1848 ||| ||| | || || || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1589 GGGTTGTTGAGGGTGACGAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTC 1648 ||| |||||| | | |||||| ||||| | || || ||| ||| | |||||| Sbjct 20926 GGGGTGTTGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTG 20867 Query 1649 TTTTCTTCGTCCAAGTACTCTTTGTATGATGATGTTGGTCCTGGATTGCAAAGGAAGATA 1708 || |||||| || ||| || ||| | ||||| ||||||||||| | |||| Sbjct 20866 GACTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATA 20807 Query 1709 GTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTT 1749 |||| || || ||||||||||||| |||||| |||||||| Sbjct 20806 CTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1685 GGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1744 ||||| ||||||||||| | |||| |||| || || ||||||||||||| |||||| ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1745 TACTTGGTGTTGCTTTGCCA 1764 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 1685 GGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1744 ||||| |||||||||| | |||| |||| || || |||||||||||||||| ||| ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1745 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1799 ||||| | ||| ||||| | | || | || | ||| | || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1800 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATT 1848 ||| ||| | || ||||| || || ||||||||||| |||||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 1658 TCCAAGTACTCTTTGTATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGATT 1717 |||||| || ||| || ||| | ||||| ||||||||||| | |||| |||| || Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1718 CCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1777 || ||||||||||||| | |||| |||||||| | ||| ||||| | | || || Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2463 Query 1778 CCCATGAATTCTTTAAAGTGCTT 1800 || | ||| | || | | ||||| Sbjct 2464 CCTACGAACTGTTGATAATGCTT 2486 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1685 GGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1744 ||||| ||||||||||| | |||| |||| || || |||||||||||||||||||| ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1745 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1800 || || | ||| | ||||| | || || || | ||| | || | | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8631782523000