Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004628.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq5745 95.1 2e-16 seq3283 95.1 2e-16 seq22495 86.0 1e-13 seq3439 86.0 1e-13 seq77518 82.4 1e-12 seq4104 77.0 6e-11 >seq5745 Length=45059 Score = 95.1 bits (104), Expect = 2e-16 Identities = 141/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1664 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGCGGGA 1720 ||||||||| ||||||| ||| || || |||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1721 ATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGG 1780 || |||||||||||||||||||| || ||||| || | |||||| ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1781 GCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATG 1834 || || ||||| | | | | || | ||| || ||| || |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1835 ACGTTGTACCAGGCGTCATT 1854 ||||| ||||| ||||| || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 190/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATT 1723 || |||||| ||||||| || ||||| |||||||| || | |||| ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1724 CCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGGGCC 1783 || ||||||||||||||||| |||||||| || | ||| | ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1784 CCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACG 1837 || | ||| | | | | |||| ||| || | ||| |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1838 TTGTACCAGGCGTCATTACTGTAGACCTTTGGG--CTAAGGTCGAGATGTCCACACAAAT 1895 || ||||| || ||||| || || ||| || ||| || | | ||| | | Sbjct 2130 TTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGT 2073 Query 1896 AGTTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCC 1935 |||||||||| || ||||| | |||||| || ||||| Sbjct 2072 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATT 1723 |||||||| ||||||| ||| ||||| |||||||| || | |||| |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1724 CCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGGGCC 1783 || | ||||||||||||||| || ||||| || | ||| | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1784 CCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACG 1837 || | ||| | | | | |||| ||| || | ||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1838 TTGTACCAGGCGTCATT 1854 || ||||| || ||||| Sbjct 217 TTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 86.0 bits (94), Expect = 1e-13 Identities = 188/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATT 1723 ||||||||| ||||||| | | ||||| ||||||| || | |||| ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1724 CCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAGTCCCTTTGGGCC 1783 || ||||||||||||||||| || ||||| || | || | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1784 CCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACG 1837 || | ||| | | | | |||| ||| || | ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1838 TTGTACCAGGCGTCATTACTGTAGACCTTTGGG--CTAAGGTCGAGATGTCCACACAAAT 1895 || ||||| || ||||| || || ||| || ||| || | | ||| | | Sbjct 810 TTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGT 753 Query 1896 AGTTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCC 1935 |||||||||| || ||||| | |||||| || ||||| Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1694 CCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1753 || |||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1754 TTAGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1807 || | |||||| || |||| | ||| || || | ||| | | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1808 AGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1854 | || ||| ||| |||||||||||||| ||||| ||||| || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATT 1723 || |||||| ||||||| ||| |||||| |||||||| || | |||| ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1724 CCACCTTTAATTTGAACTGGCTTCCCGTATTT 1755 || ||||||||||||||||| || ||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800