Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004634.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq3283 100 5e-18 seq5745 96.9 6e-17 seq3439 96.9 6e-17 seq77518 91.5 3e-15 seq33 91.5 3e-15 seq22495 87.8 3e-14 seq1993 86.0 1e-13 seq490 80.6 5e-12 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 176/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1722 || ||||||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1723 TATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1777 || |||| |||| ||||| | | || || || | ||||| | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1778 -TAAGAAAGTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAGACC 1836 | | | | | ||| |||||| || |||||||| |||||||| || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1837 TTTGGACTCAGATC--TAGATGCCCACACAGATAGTTATGTGGGCCTAGTGACCTGGCCC 1894 || | | | | ||| || || |||| | ||||| |||||||||| ||| | |||| Sbjct 2103 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1895 ACATTGTCTTCCC 1907 | ||| ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 178/254 (70%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 ||||||||||| | | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTAAGA 1782 |||| || || ||||| | | ||| || || ||||||| | ||| | | |||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1783 AAGT--GC-GGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAGACCTTT 1839 || | || || || ||||||||||||||| |||||||||||||| || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1840 GGACTCAGATCTA-GATGCCCACACAGATAGTTATGTGGGCCTAGTGACCTGGCCCACAT 1898 | | ||| ||| | | ||||| | ||| |||||||| || | || | ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1899 TGTCTTCCCGGTTC 1912 ||| || ||| ||| Sbjct 43780 TGTTTTACCGATTC 43793 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 175/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1722 || ||| ||||||| || | ||| | || ||||||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1723 TATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1777 || |||| ||||| ||||| | | || || || | ||||| | | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1778 -TAAGAAAGTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAGACC 1836 | | | | | ||| ||| ||||| |||||||| |||||||| || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1837 TTTGGACTCAGATC--TAGATGCCCACACAGATAGTTATGTGGGCCTAGTGACCTGGCCC 1894 || | | | | ||| || || |||| | ||||| |||||||||| ||| | |||| Sbjct 783 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1895 ACATTGTCTTCCC 1907 | ||| ||||| Sbjct 725 ATGCTGTTTTCCC 713 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 ||||||||||| || | ||| || |||||||||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGC---TTAAGA 1782 |||| || || || |||| | ||| || || | ||||| | | | ||| |||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1783 AAGT--GC-GGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1826 || | || || ||| |||||||||||||| ||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 ||||||||||| || | ||| || ||||||| ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTAAGA 1782 |||| || || ||||||| | || | || | ||||| | ||| | | |||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1783 AAGT--GC-GGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1826 || | || || |||||||||||||||||| ||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1722 || ||||||||||| || | ||| | | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1723 TATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1777 || |||| |||| ||||||| | || || || | ||||| | | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1778 -TAAGAAAGTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1826 | | | | | ||| || |||||| |||||||| |||||||| || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 ||||||||||| || | ||| || |||||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTAAGA 1782 |||| || || ||||| | | ||| || | | ||||| | ||| | | |||| Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1783 AAGT--GC-GGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTT 1826 || | || || |||||||||||||||||| ||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/166 (72%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 1671 ATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGT 1730 ||||||||||| |||| ||||| || ||||||||||| | |||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1731 GTTGGATTGCCAGTCCCTTTG---GGCCCCCATGAACTCCTTAAAGTGCTT----AAGAA 1783 | | ||||||| || || |||||| || | |||| | | ||||| ||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1784 AG-TGC-GGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTG 1827 || ||| || ||||||||| |||||||| ||||||| || ||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTG 70456 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1663 GGACCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1722 || ||||||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1723 TATTTTGTGTTGGATTGCCA 1742 || |||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622191653530