Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004637.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq33 120 5e-24 seq5745 116 6e-23 seq77518 114 2e-22 seq3439 107 3e-20 seq3283 107 3e-20 seq4295 100 5e-18 seq54129 96.9 6e-17 seq1993 93.3 7e-16 seq490 93.3 7e-16 seq5493 89.7 9e-15 seq1010 89.7 9e-15 seq22495 87.8 3e-14 >seq33 Length=454124 Score = 120 bits (132), Expect = 5e-24 Identities = 245/357 (69%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 1508 TAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCT 1567 || || |||| ||||| ||| ||||| ||||| || | |||||||| || | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1568 GCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGACTCC-CT---CCCCAGGATTGCA 1623 | ||| ||| | |||| ||| |||||||| ||| | || ||||||||||||| Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAA--GACAACTCTGGACCCCAGGATTGCA 403292 Query 1624 GAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTT 1683 |||||||| |||| || || | ||||||||||||||| ||||||| |||| | |||| Sbjct 403291 AAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGT-ACTTTGC-ATTT 403234 Query 1684 GACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTG 1743 |||||||||| || | || | | || | | || ||| ||| ||| Sbjct 403233 GACTGCCAGTTGCACTGTACGCCTACGAACT-GTTGATAATGATTTTTAATTAAATAAGC 403175 Query 1744 GGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAA 1803 || | ||| ||||| |||||||| || | | ||||| || || | ||||| || Sbjct 403174 TGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAA 403115 Query 1804 GTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTT 1860 |||| | || | | |||||||||||| || |||||||| ||||| | ||| || Sbjct 403114 ATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq5745 Length=45059 Score = 116 bits (128), Expect = 6e-23 Identities = 247/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 1507 ATAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACC 1566 |||||| |||| ||||| ||| |||| |||||| || | ||| |||| || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1567 TGCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGA---CTCCCTCCCCAGGATTGCA 1623 || ||| ||| | || | ||| |||||||| | || ||||||||||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCA 43551 Query 1624 GAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTT 1683 | |||||| |||| || |||||||||||||||||||| || |||| |||| | |||| Sbjct 43552 AATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGT-ACTTTGC-ATTT 43609 Query 1684 GACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTG 1743 |||||||| | ||| || || || | || | | || ||| ||| ||| Sbjct 43610 GACTGCCAATTGCATTGTGCTCCTATGAACT-GTTGATAATGTTTTTTAATTAAATAAGC 43668 Query 1744 GGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATAGACCTTAGAATTG 1801 || | || ||||| ||||||| ||| ||| | ||||| || || || ||||| Sbjct 43669 TGGAGGGATGTCATCAATGACGT--TATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1802 AAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTC 1861 || |||| | || | | ||||||||||| || |||||||| ||||| | ||| || Sbjct 43727 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTA 43786 Query 1862 CC 1863 || Sbjct 43787 CC 43788 >seq77518 Length=14724 Score = 114 bits (126), Expect = 2e-22 Identities = 244/360 (68%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 1507 ATAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACC 1566 |||||| ||| ||||| ||| ||||| ||||| || | |||||||| ||| | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1567 TGCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGA---CTCCCTCCCCAGGATTGCA 1623 || ||| ||| || | |||| |||||||| | || ||||||||||||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCA 2390 Query 1624 GAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTT 1683 || ||||| |||| || || |||||||||||||||| ||| ||| |||| | |||| Sbjct 2389 AAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGT-ACTTTGC-ATTT 2332 Query 1684 GACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTG 1743 ||||| |||| ||| || || | | || | | |||||| ||| ||| Sbjct 2331 GACTGTCAGTTGCGTTGTGCTCCTACGAACT-GTTGATAATGCTTTTTAATTAAATAAGC 2273 Query 1744 GGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAA 1803 || | ||||||||| |||||||| || | | ||||| || || || |||| || Sbjct 2272 TGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAA 2213 Query 1804 GTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCC 1863 |||| | || | | ||||||||||| || ||| |||| ||||| | ||| || || Sbjct 2212 ATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 187/264 (71%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 1613 CCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAA 1672 ||| ||||||| || ||||| ||| || || ||||||||||||||||| |||||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA- 902 Query 1673 CTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTT--TA 1730 ||| | || | ||||| | | || || || | | || | | ||||| || Sbjct 901 CTTTGCG-TTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGT-TGATAATGCTTCTTA 844 Query 1731 ACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATA 1788 | ||| ||| | || | |||||||||||||||||| || ||| | || ||||| || Sbjct 843 A--TTAAATAATTCGGAGGGACATCATCGATGACGTTATA--CCATGCATCATTTGAGTA 788 Query 1789 GACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGC 1848 || ||||| || |||| | ||| | | ||| || ||||||||||| |||||||| Sbjct 787 CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 728 Query 1849 CCACATTGTCTTCCCTGTCCTTGA 1872 ||| ||| |||||| | ||||| Sbjct 727 CCATGCTGTTTTCCCTATTCTTGA 704 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 187/264 (71%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 1613 CCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAA 1672 ||||||||||| || ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA- 2222 Query 1673 CTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTT--TA 1730 ||| || || | |||||| | | || || || | | || | | ||||| || Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGT-TGATAATGCTTCTTA 2164 Query 1731 ACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATA 1788 | ||| ||| | || | ||| || ||||||||||| || ||| | || ||||| || Sbjct 2163 A--TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATA--CCATGCATCATTTGAGTA 2108 Query 1789 GACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGC 1848 || ||||| || |||| | ||| | | ||| || ||||||||||| |||||||| Sbjct 2107 CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 2048 Query 1849 CCACATTGTCTTCCCTGTCCTTGA 1872 ||| ||| |||||| | ||||| Sbjct 2047 CCATGCTGTTTTCCCTATTCTTGA 2024 >seq4295 Length=67413 Score = 100 bits (110), Expect = 5e-18 Identities = 176/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 1616 GGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTT 1675 |||||| ||||||||||| |||| ||||| |||||||||||| |||| || |||| |||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGT-ACTT 46785 Query 1676 AACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTT 1735 | |||||| | ||| | | || || |||| |||| | || || | ||| || Sbjct 46784 GGC-ATTTGAGTTCCAATTGTACTGGGCCACAATGAGCT-CTTTTCAATATTTTTTCTGC 46727 Query 1736 AGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATAGACCT 1793 | ||| | | || ||||| || |||||||| ||| | | || ||| | | Sbjct 46726 AAATAGGATAGAGATACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATT 46669 Query 1794 TAGAATTGAAGTCCA-GATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCAC 1852 | ||||| || |||| || | ||| | | ||| |||||||||| ||| || || ||||| Sbjct 46668 TCGAATTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCAT 46610 Query 1853 ATTGTCTT 1860 |||||||| Sbjct 46609 ATTGTCTT 46602 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 182/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 1613 CCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAA 1672 ||||||||||| || ||||| ||| || || ||||||||||||| ||| |||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA- 2199 Query 1673 CTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTT--TA 1730 ||| || || | ||| |||| | || || || | | || | | ||||| || Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGT-TGGTAATGCTTCTTA 2141 Query 1731 ACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGA 1790 | ||| ||| | || | |||||| ||||||||||| || || || ||||| || Sbjct 2140 A--TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATG 2083 Query 1791 CCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCC 1850 || ||||| || | || | ||| | | ||| || ||| ||| ||| |||||||||| Sbjct 2082 TTTTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1851 ACATTGTCTTCCCTGTCCTTGA 1872 | ||| || ||| | ||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGA 2001 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 1610 TCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCG 1669 |||||||||||||| |||||||| |||| || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1670 TAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTT 1729 | |||| | |||||||||||| | ||| || | | | || | | || ||| Sbjct 74346 T-ACTTTGC-ATTTGACTGCCAATTGCGTTGTGCTCATACGAACT-GTTGATAATGATTT 74290 Query 1730 AACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAG 1789 ||| ||| || | ||| ||||| |||||||| || | | | ||| || || Sbjct 74289 TTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1790 ACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCC 1849 || ||||| || |||| | || | | ||||||||||| || |||||||| | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1850 CACATTGTCTTCCCTGTCCTTGAATCACCTTC 1881 || | ||| || || | || ||| ||||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq490 Length=137872 Score = 93.3 bits (102), Expect = 7e-16 Identities = 174/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 1618 ATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAA 1677 |||||| || || |||||||||||||||||||||||||| | |||||| | || || Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATA--TTTT 70561 Query 1678 CAATTTGACTGCCAG-TCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTA 1736 ||| | |||||| | | ||| || ||||| ||||||| |||| ||||| | | Sbjct 70560 GAATCAGCTTGCCAGCTATGCTTG-GCCCCAATAAGCTCCC-TCCAATGCTTCTTCCAGA 70503 Query 1737 GATATTGGGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATAGACCTT 1794 || || || | ||| ||||| ||||||| ||| ||| || || ||| | ||| Sbjct 70502 GAGATGCTGGAGGGACGTCATCTATGACGT--TATACCATGACTCATTGGAAAATGTCTT 70445 Query 1795 AGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACAT 1854 |||||| |||| | || | |||||||||||||| || || | |||||| Sbjct 70444 TCTATTGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTC 70385 Query 1855 TGTCTTCCC 1863 |||||||| Sbjct 70384 AGTCTTCCC 70376 >seq5493 Length=32325 Score = 89.7 bits (98), Expect = 9e-15 Identities = 118/157 (75%), Gaps = 10/157 (6%) Strand=Plus/Minus Query 1616 GGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTT 1675 |||||||| | ||| || ||| ||||||| ||||||||||||||| || |||| |||| Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGT-ACTT 31501 Query 1676 AACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTT 1735 || |||||| ||||||| | ||||| | || |||| | ||||| |||| |||| Sbjct 31500 CAC-ATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCT-CTTTCCA--GCTT---CTTT 31448 Query 1736 --AGATATTGGGGTGTGACATCATCGATGACGTTGTA 1770 |||||| |||| || ||||| |||| |||||| Sbjct 31447 GCAGATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 >seq1010 Length=204159 Score = 89.7 bits (98), Expect = 9e-15 Identities = 201/291 (69%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 1617 GATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTA 1676 |||||||||||||||| || | |||| ||||||||| |||||| || |||| ||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGT-ACTTA 40856 Query 1677 ACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTA 1736 | |||||| ||||| | | || | | ||| |||| | ||||| || ||| ||| Sbjct 40855 GC-ATTTGATTGCCAATTGTACTGGACCCTAATGAGCT-CTTTCCAATGATTT-TTTTTG 40799 Query 1737 GATATTGGGGTGTGACA--TCATCGATGACGTTGTATTCCA--CTTCGTTTGAATAGACC 1792 | || || | |||| ||||| || || | ||| ||| | | || ||| | Sbjct 40798 CAAATAGGATAGAGACACGTCATCTATAACAT--TATACCATGCATTATTCGAAAATGAT 40741 Query 1793 TTAGAATTGAAGTCCA-GATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCA 1851 || ||||| || || | || | ||| | | ||| |||||||||||||| || || |||| Sbjct 40740 TTTGAATTAAAATCTATGAAGCCCA-TTATGTAGTTATGTGGGCCTAAAGATCGTTCCCA 40682 Query 1852 CATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCT 1902 |||||||| || | || | |||||| | ||| |||| |||| || Sbjct 40681 TATTGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 167/238 (70%), Gaps = 11/238 (5%) Strand=Plus/Minus Query 1613 CCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAA 1672 ||||||||||| || ||||| | | || || | ||||||||||||||| ||||||| | Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGT-A 309 Query 1673 CTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCT--TTA 1730 ||| | ||| | |||||||| || || || | | || | || |||| ||| Sbjct 308 CTTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCTTA 251 Query 1731 ACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCA--CTTCGTTTGAATA 1788 | ||| ||| | || | || ||||||||||||| ||| ||| | || ||||| || Sbjct 250 A--TTAAATAATTCGGAGGGATGTCATCGATGACGT--TATACCATGCATCATTTGAGTA 195 Query 1789 GACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGA 1846 || ||||| || |||| | ||| | | ||| || ||||||||||| |||||| Sbjct 194 CGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8420783394660