Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004638.1 Length=2582 Score E Sequences producing significant alignments: (Bits) Value seq4295 113 7e-22 seq33 102 1e-18 seq1010 98.7 2e-17 seq5493 96.9 6e-17 seq5745 95.1 2e-16 seq1993 91.5 2e-15 seq3283 87.8 3e-14 seq77518 84.2 4e-13 seq3439 82.4 1e-12 seq22495 78.8 2e-11 seq490 78.8 2e-11 >seq4295 Length=67413 Score = 113 bits (124), Expect = 7e-22 Identities = 202/288 (70%), Gaps = 23/288 (8%) Strand=Plus/Minus Query 1495 TCGAGGAAAGCTTTATAGCTGGAACCCTCG------CCAGGATTGCAGAGCACGATTGAT 1548 ||||| ||||||||||| |||| ||| | |||||| ||||||||||| || Sbjct 46879 TCGAGAAAAGCTTTATAC---GAACACTCTGGTGTCCTTGGATTGTAGAGCACGATTCAT 46823 Query 1549 GGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTT 1608 ||||| || |||||||||||| | || || ||||||||| |||||| | ||||| | Sbjct 46822 GGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCCAATTGTAC 46763 Query 1609 TGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACT----TTAGGTATTGCGGTGCGACGTC 1664 |||||| | | || ||||| || | ||| || |||| || | | | ||||| Sbjct 46762 TGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGG-ATAGAGAT---ACGTC 46707 Query 1665 ATCAATGACGTTATAC--TCCACTCCATTCGAATAGACCCTAGAATTGAAATCGA-GATG 1721 ||| || ||||| ||| | || | ||||||| | | ||||| ||||| | || | Sbjct 46706 ATCTATAACGTTGTACCATGCATT--ATTCGAAAATGATTTCGAATTAAAATCCATGAAG 46649 Query 1722 ACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCACATCGTCTT 1769 || | | ||| |||||||||| ||| ||||||||| || ||||| Sbjct 46648 -CCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||||||||||| |||||||| |||| ||||| | |||||||||||| || ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTT 1644 || |||||| ||||| | || | || | | | || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1645 AGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCCTA 1704 | || || | |||||||||||||||||||||| | | | ||||| || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1705 GAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCA 1760 ||||| ||||| | | || | | |||||||||||| || || |||||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq1010 Length=204159 Score = 98.7 bits (108), Expect = 2e-17 Identities = 199/289 (69%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 1529 GATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTACTTGC 1588 |||||||||||||||| || |||| | ||||||||| ||| || || |||||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1589 AATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTTAGGT 1648 |||||||||||||| | ||| ||| | || |||||||| || ||| ||| | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT--TTTTTGCA 40797 Query 1649 ATTGCG---GTGCGACGTCATCAATGACGTTATAC--TCCACTCCATTCGAATAGACCCT 1703 | | | | | |||||||| || || |||||| | || | ||||||| | | Sbjct 40796 AATAGGATAGAGACACGTCATCTATAACATTATACCATGCATT--ATTCGAAAATGATTT 40739 Query 1704 AGAATTGAAATCGA-GATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCACA 1762 ||||| ||||| | || | || | | ||| |||||||||||||| ||| |||| | Sbjct 40738 TGAATTAAAATCTATGAAG-CCCATTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATA 40680 Query 1763 TCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGATACTAATAGGTCT 1811 | ||||| || ||| || ||| || | |||| ||| |||| || Sbjct 40679 TTGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 Score = 91.5 bits (100), Expect = 2e-15 Identities = 200/293 (68%), Gaps = 14/293 (5%) Strand=Plus/Plus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 || ||||||||||||||||| ||||||| | ||||||||||||| | || |||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTT 1644 ||| || ||||||||||| | | ||||| | || |||||||| | ||| ||| Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTT---TTT 36598 Query 1645 AGGTATTGCG---GTGCGACGTCATCAATGACGTTATAC--TCCACTCCATTCGAATAGA 1699 | | | | | | || ||||| |||| |||||| | || | | ||||| | Sbjct 36599 TGCAAATAGGATCGAGACACATCATCTATGAAATTATACCATGCATT--AATCGAAAATG 36656 Query 1700 CCCTAGAATTGAAATCGA-GATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCC 1758 | ||||| ||||| | || | || | | ||| ||| |||||||||| |||||| Sbjct 36657 ATTTCGAATTAAAATCCATGAAG-CCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCC 36715 Query 1759 CACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGATACTAATAGGTCT 1811 || || ||||| || ||| || || || | ||||| ||| |||| || Sbjct 36716 CATATTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACTCTTAGGCCT 36768 >seq5493 Length=32325 Score = 96.9 bits (106), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 7/155 (5%) Strand=Plus/Minus Query 1528 GGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTACTTG 1587 |||||||| | ||| || ||| ||| || | |||||||||||| || || |||||||| Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1588 CAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTT--A 1645 |||||||||||| | | ||| | || || || |||||||| |||| |||| | Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCA--GCTT---CTTTGCA 31445 Query 1646 GGTATTGCGGTGCGACGTCATCAATGACGTTATAC 1680 | ||| ||||| ||||||||||||| ||| ||| Sbjct 31444 GATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq5745 Length=45059 Score = 95.1 bits (104), Expect = 2e-16 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||||||||||| | |||||| |||| ||||| |||||||||||||| || || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTT 1644 || |||||| ||||||| ||| || || | | | || | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1645 AGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCCTA 1704 | || || | || ||||||||||||||||||| | | ||||| || | Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1705 GAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCACATC 1764 ||||| ||||| | | || | | ||||||||||| || || |||||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1765 GTCTTGCCCGTTCGAGA 1781 || || || ||| ||| Sbjct 43781 GTTTTACCGATTCTAGA 43797 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 2e-15 Identities = 187/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 1522 TCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCG 1581 || ||||||||||| |||||||| |||| ||||| ||||||||||||| || || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1582 TACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAAC 1641 ||||| |||||| ||||||| ||| || | | | | || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1642 TTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACC 1701 ||| || || | |||||||||||||||||||||| | | ||||| || Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1702 CTAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCAC 1761 | ||||| ||||| | | || | | ||||||||||| || || |||| ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1762 ATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGAT 1799 | || || || ||| ||| || ||||| || || Sbjct 74166 ACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||||||||||| || ||||| ||| ||||| |||||||||||||| || || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCT--TTAACT 1642 || ||| | ||||||| | || || || | | | || | |||| |||| Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA-- 2163 Query 1643 TTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCC 1702 ||| || | ||| | |||||| || |||||||||||| | |||| || || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1703 TAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAA 1748 | ||||| ||||| | | || | | ||| || ||||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAA 2057 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 185/275 (67%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||||||||||| || ||||| |||| ||||| |||||||||||||| | ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTT 1644 || |||||| || || | ||| || || | | | || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1645 AGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCCTA 1704 | || || | ||| |||||||||||||||||| | | | ||||| || | Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1705 GAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTGCCCACATC 1764 |||| ||||| | | || | | ||||||||||| || || |||||||| | Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACT 2161 Query 1765 GTCTTGCCCGTTCGAGAGTCACCCTCAATTATGAT 1799 || || || ||| || || || ||||| || || Sbjct 2160 GTTTTACCGATTCTAG-GT--CCTTCAATAATAAT 2129 >seq3439 Length=62978 Score = 82.4 bits (90), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||| ||||||| || ||||| ||| ||||| |||||||||||||| || ||||||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCT--TTAACT 1642 || || | ||||||| | || || || | | | || | |||| |||| Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA-- 843 Query 1643 TTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCC 1702 ||| || | ||| | ||| ||||| |||||||||||| | |||| || || Sbjct 842 TTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1703 TAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAA 1748 | ||||| ||||| | | || | | ||| || ||||||||||| Sbjct 782 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAA 737 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1525 CCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTAC 1584 ||||||||||| || ||||| | | ||||| | |||||||||||| || ||||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1585 TTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCT--TTAACT 1642 || ||| | ||||| | || || || | | | || || |||| |||| Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA-- 250 Query 1643 TTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAATAGACCC 1702 ||| || | ||| | || |||||| |||||||||||| | |||| || || Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 190 Query 1703 TAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAA 1748 | ||||| ||||| | | || | | ||| || ||||||||||| Sbjct 189 TGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAA 144 >seq490 Length=137872 Score = 78.8 bits (86), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 1530 ATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCTTTCCGTACTTGCA 1589 |||||| || || |||||||| || || ||||||||||| | ||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1590 ATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCTTTAACTTTAGGTA 1649 || | |||||| | | |||||| | ||| || |||| ||||| | || | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1650 TTGCGGTGCGACGTCATCAATGACGTTATA-CTCCACTCCATTCGAATAGACCCTAGAAT 1708 | || | ||||||||| ||||||||||| | ||| |||| ||| | | | || Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACT-CATTGGAAAATGTCTTTCTAT 70440 Query 1709 TGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAA 1748 ||||||| | | || | |||||||||||||| || || Sbjct 70439 TGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAA 70400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8145845136520