Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004640.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq5745 113 8e-22 seq3439 113 8e-22 seq3283 113 8e-22 seq33 105 1e-19 seq1993 104 4e-19 seq77518 102 1e-18 seq490 87.8 3e-14 seq22495 78.8 2e-11 >seq5745 Length=45059 Score = 113 bits (124), Expect = 8e-22 Identities = 184/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 1709 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1767 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1768 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1825 ||| || ||| | | | | | | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCAT-TGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1826 TA--TTGG--GGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTT 1881 || | | ||| || ||||||||||||||||||||| || ||| || ||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1882 TGGGCTCAAGTCCA-AATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAA 1940 | |||| |||| || | ||| | ||||||||||||||| || || |||||||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1941 CTGTTTTACCTATCCTA 1957 |||||||||| || ||| Sbjct 43779 CTGTTTTACCGATTCTA 43795 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 194/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1713 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1772 ||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1773 AGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGT 1826 |||| ||||| | ||| || || | ||| | | | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1827 ATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGC 1886 | | ||| ||| ||||| |||||||||||||| ||| || |||| ||| | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1887 TCAAGTCCAAATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAACTGTTT 1946 | || |||| | || | || || ||||| ||||| || || ||||| |||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1947 TACCTATCCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1988 | ||||| || ||||||||| || | ||| || ||||||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 199/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1708 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1767 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1768 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1820 ||| || ||| ||||| | ||| || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1821 TTAGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTT 1880 ||| || | ||| |||||| || |||||||||||||| ||| || |||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1881 TTGGGCTCAAGTCCAAATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAA 1940 | | | || |||| | || | || || ||||| ||||| || || ||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1941 CTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1988 ||||||| ||||| || ||||||||| || | ||| || ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq33 Length=454124 Score = 105 bits (116), Expect = 1e-19 Identities = 200/288 (69%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 1709 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1767 || |||||||| || | |||| ||||| || | ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1768 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT----- 1822 ||| || ||| | |||||| ||| | || | ||| | | | | || ||| Sbjct 403242 TTTGCATTTGACT-GCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1823 -AGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTT 1881 | || ||| |||||||||||||||||||||||| || ||| ||| | | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1882 TGGGCTCAAGTCCA-AATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAA 1940 | |||| |||| || | ||| | |||||||||||||| || || |||||||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCAAA 403065 Query 1941 CTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1988 ||||||| | || ||| || ||||| || | ||| || |||||| Sbjct 403064 CTGTTTT-TCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 194/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1706 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCG 1765 || || |||||||| || | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1766 TA-TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT-- 1822 || ||| || ||| | | | | | | || || | | ||| | | | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGT-TGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1823 ----AGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACAC 1878 | || ||| |||||||||||||||||||||||| || |||| || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1879 TTTTGGGCTCAAGTCCA-AATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCC 1937 ||| | |||| |||| || | ||| | ||||||||||||||| || || |||| || Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGTCC 74169 Query 1938 AAACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAAT 1977 ||||||||||||| || ||| || ||||| || | ||| Sbjct 74168 AAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 192/277 (69%), Gaps = 13/277 (5%) Strand=Plus/Minus Query 1709 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1767 || |||||||| || | |||| ||||| || |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1768 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT----- 1822 ||| || ||| | | |||| || || || | ||| | | | | |||||| Sbjct 2340 TTTGCATTTGACT-GTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1823 -AGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTT 1881 | || ||| ||| |||||||||||||||||||| || ||| ||| ||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTT 2222 Query 1882 TGGGCTCAAGTCCA-AATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAA 1940 |||| |||| || | ||| | ||||||||||||||| || | |||||||||| Sbjct 2221 CAAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACTAACGTGCCCAAA 2163 Query 1941 CTGTTTTACCTATCCTACTTGGGCCTTCTATTACAAT 1977 |||||||||| || ||| || ||||| || | ||| Sbjct 2162 CTGTTTTACCGATTCTA---GGTCCTTCAATAATAAT 2129 >seq490 Length=137872 Score = 87.8 bits (96), Expect = 3e-14 Identities = 216/321 (67%), Gaps = 19/321 (6%) Strand=Plus/Minus Query 1689 ATTTAAAAGAGGAACC----CTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCT 1744 ||||| ||||| | || ||||| | |||||| |||| || | || ||||||||| Sbjct 70646 ATTTATAAGAGTAGCCTGTACTCTCATT-ATTGCATAGGACAATTGATGGTATTCCACCT 70588 Query 1745 TTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATG 1804 |||||||| | |||||| | ||||| | | ||||||| | || |||||| || Sbjct 70587 TTAATTTGTATTGGCTTAGCATATTTTGAATCAGCTTGCCAGCTATGCTTGGCCCCAATA 70528 Query 1805 AATTCCTTAAAGTGCTT------TAGGTATTGGGGATTGACGTCATCAATGACGTTATAC 1858 | ||| | | ||||| || || ||| ||||||||| |||||||||||| Sbjct 70527 AGCTCCCTCCAATGCTTCTTCCAGAGAGATGCTGGAGGGACGTCATCTATGACGTTATAC 70468 Query 1859 CAAGCACTGTTGCTGTACACT---TTTGGGCTCAAGTCCA-AATGACCACACAGATAATT 1914 || | ||| | || | | | ||| | || |||| || | ||| | || ||||| Sbjct 70467 CATG-ACTCAT--TGGAAAATGTCTTTCTATTGAAATCCATAACGCCCATAAAG-TAATT 70412 Query 1915 ATGTGGACCTAAAGACCGTGCCCAAACTGTTTTACCTATCCTACTTGGGCCTTCTATTAC 1974 ||||||||| ||| | ||||| | || || || | ||| ||| |||||||| | Sbjct 70411 ATGTGGACCCAAACTTCTAGCCCATTCAGTCTTCCCAAGTCTAGATGGACCTTCTATAAT 70352 Query 1975 AATACTAATGGGCCTATCTGG 1995 | | |||||||||||||| Sbjct 70351 TAAAGACATGGGCCTATCTGG 70331 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 1708 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1767 ||| |||||||| || | |||| | |||| || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1768 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1820 ||| || ||| ||||||| ||| || || | ||| | | | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1821 TTAGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCA 1864 ||| || | ||| || |||||| |||||||||||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8753021777550