Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004645.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq5745 109 9e-21 seq1010 102 1e-18 seq3439 100 5e-18 seq33 100 5e-18 seq3283 98.7 2e-17 seq77518 93.3 7e-16 seq4295 93.3 7e-16 seq22495 91.5 2e-15 seq490 91.5 2e-15 seq1993 86.0 1e-13 seq20728 77.0 5e-11 >seq5745 Length=45059 Score = 109 bits (120), Expect = 9e-21 Identities = 253/374 (68%), Gaps = 17/374 (5%) Strand=Plus/Plus Query 1455 ATAGAGGGGGCTCTCGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCCTT-TAGTG 1513 |||||| ||| | |||| |||| |||| |||||||| ||| ||| | | || || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1514 CGGTATTTTCCGCTTTGTCCAGGAAATCTTTATAG-------CTGGCCCCCTCGCCTGGA 1566 | |||| || | || | ||| ||||||| |||| |||| | ||| Sbjct 43492 TGA-ATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGA 43546 Query 1567 TTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA-TTTACA 1625 ||||| | |||||| | || |||||||||||||||||||| || || || || ||| || Sbjct 43547 TTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA 43606 Query 1626 GTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTA 1685 || || ||||| | | || || || || || | || |||| ||| ||| || Sbjct 43607 -TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATA 43665 Query 1686 TTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAATT 1745 |||| || |||||| |||||||||||| || |||||||| | | ||||| Sbjct 43666 AGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATT 43725 Query 1746 GAAAT-CAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCT 1804 |||| || ||||| | ||||| ||||| | || | | ||| ||||| | ||| | Sbjct 43726 CAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTT 43784 Query 1805 TGCCGGTTCTAGAA 1818 | ||| |||||||| Sbjct 43785 TACCGATTCTAGAA 43798 >seq1010 Length=204159 Score = 102 bits (112), Expect = 1e-18 Identities = 258/388 (66%), Gaps = 16/388 (4%) Strand=Plus/Minus Query 1455 ATAGAGGGGGCTCTCGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGC 1514 ||||| ||| | |||||||||| ||||| |||||| |||||||||| ||| | | Sbjct 41027 ATAGAAAGGGGTGTCGAGGAAGAAGAATTCTGCATTTCTTAATGTCCATTTCTTCAAAGT 40968 Query 1515 GGTATTTTCCGCTTTGTCCAGGAAATCTTTATAGC------TGGCCCCCTCGCCTGGATT 1568 |||| | | | || || ||| |||||| ||| | ||| |||| Sbjct 40967 TAAATTTACATCATGTTCTAGAAAAGATTTATACGAATATTTGGGTGTC---CCTAGATT 40911 Query 1569 GCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTT 1628 ||| |||||||| | |||| | ||||||||| ||| || || || || ||| || Sbjct 40910 GCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAGCATT 40851 Query 1629 GGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTATTG 1688 |||||||| | |||| ||| ||| | ||||||||||| ||| ||| | | | Sbjct 40850 TGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT--TTTTTGCAAATA 40793 Query 1689 CG---GAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAATT 1745 | ||| |||||||| || || |||||| |||| ||||| || | ||||| Sbjct 40792 GGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAATT 40733 Query 1746 GAAATC-AAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCT 1804 ||||| | | ||||| | || |||||||| | |||| | || |||| ||||||| Sbjct 40732 AAAATCTATGAAGCCCA-TTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATTGTCT 40674 Query 1805 TGCCGGTTCTAGAATCACCCTCTACTAT 1832 | || |||||| ||| |||| ||| Sbjct 40673 TTCCAATTCTAGTTGGACCTTCTAATAT 40646 Score = 86.0 bits (94), Expect = 1e-13 Identities = 181/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 1561 CCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA- 1619 ||||||||||| |||||||| | ||||| | ||||||||||||| | || || || Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1620 TTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAA-TGCTTTAGC- 1677 || ||| | |||||||| | || ||||| ||||| ||||||||| | ||| || Sbjct 36544 TTGACA-TGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAATTTTTTTTGCA 36602 Query 1678 TTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACC 1737 |||| || ||| || ||||| |||| |||||| |||| |||| || Sbjct 36603 AATAGG-AT---CGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGAT 36658 Query 1738 CTAGAATTGAAAT-CAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCA 1796 | ||||| |||| || | ||||| | || |||||| | | |||| | || ||||| Sbjct 36659 TTCGAATTAAAATCCATGAAGCCCA-TTATGTAGTTACGTGGGCCTAAAGATCGTGCCCA 36717 Query 1797 CATTGTCTTGCCGGTTCTAG 1816 |||||||| || |||||| Sbjct 36718 TATTGTCTTCCCAATTCTAG 36737 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 174/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 1565 GATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATATTTAC 1624 ||||||| || ||||| || ||||| |||||||||||||| || ||||| || || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1625 AGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGT 1684 ||||| ||||| | || ||| || || | || | || ||||||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1685 ATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAAT 1744 | | ||||| ||| |||||||||||||||||| ||||| || ||| | | |||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1745 TGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCT 1804 | ||||| | || | || ||||| || | |||| | ||||||||| ||| | Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1805 TGCCGGTTCTAGA 1817 | || |||| || Sbjct 716 TCCCTATTCTTGA 704 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 182/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 1561 CCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA- 1619 || |||||||| |||||||| | || ||||| | |||||||||||| || ||||| || Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1620 TTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTT 1679 ||| || || || ||||||| | ||| | || | || | || |||| ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1680 TAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCT 1739 || || |||| ||||||||| |||||||||||| || ||||||||| | || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1740 AGAATTGAAAT-CAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACA 1798 ||||| |||| || ||||| | || || ||||| | || | | ||| ||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCAAA 403065 Query 1799 TTGTCTTGCCGGTTCTAGAA 1818 ||| || | |||||||| Sbjct 403064 CTGT-TTTTCAATTCTAGAA 403046 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1561 CCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA- 1619 || |||||||| || ||||| || ||||| |||||||||||||| || || || || Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1620 TTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTT 1679 ||| || |||| ||||| | || ||| || || | || | || ||||||| | Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1680 TAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCT 1739 || || | ||||| |||||| ||||||||||||||| ||||| || ||| | | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1740 AGAATTGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACAT 1799 ||||| ||||| | || | || ||||| || | |||| | ||||||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1800 TGTCTTGCCGGTTCTAGA 1817 ||| || || |||| || Sbjct 2041 TGTTTTCCCTATTCTTGA 2024 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 246/371 (66%), Gaps = 15/371 (4%) Strand=Plus/Minus Query 1455 ATAGAGGGGGCTCTCGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGC 1514 |||||| || | |||| |||| ||||| ||||||| ||| ||||| | ||| Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1515 GGTATTTTCCGCTTTGTCCAGGAAATCTTTATAG-------CTGGCCCCCTCGCCTGGAT 1567 | |||| || |||| ||| ||||||| |||| |||| | |||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC----CAGGAT 2394 Query 1568 TGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA-TTTACAG 1626 |||| || ||||| | || ||||| |||||||||||||| | ||| | || ||| || Sbjct 2393 TGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCAT 2334 Query 1627 TTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTAT 1686 ||| | || |||| | || || || | || | || |||||||| ||| || Sbjct 2333 TTG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAA 2275 Query 1687 TGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAATTG 1746 |||| ||| ||||| |||||||||||| || ||||||||| | | |||| Sbjct 2274 GCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTC 2215 Query 1747 AAAT-CAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCTT 1805 |||| || ||||| | ||||| ||||| | || | ||| ||||| | ||| || Sbjct 2214 AAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTT 2156 Query 1806 GCCGGTTCTAG 1816 ||| |||||| Sbjct 2155 ACCGATTCTAG 2145 >seq4295 Length=67413 Score = 93.3 bits (102), Expect = 7e-16 Identities = 233/350 (67%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 1461 GGGGCTCTCGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGCGGTATT 1520 |||| | ||| ||||| ||||| |||||| ||||||||| ||| | | ||| Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1521 TTCCGCTTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCG----CCTGGATTGCACAGCA 1576 | ||| || || ||| ||||||| | | | || | | ||||||| | |||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGCA 46831 Query 1577 CGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCC 1636 ||||| | ||||| || |||||||||||| | || || || || || || || | || Sbjct 46830 CGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCC 46771 Query 1637 AGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGA 1696 | | ||||||| |||| | ||||| |||| ||| || | || ||| | Sbjct 46770 AATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATA 46711 Query 1697 CGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAATTGAAAT-CAAGG 1755 ||||||| || ||||| ||| |||| ||||| || | ||||| |||| || | Sbjct 46710 CGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATGA 46651 Query 1756 TGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCTT 1805 ||||| | || |||||||| | | || | || ||||| |||||||| Sbjct 46650 AGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 2e-15 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 1561 CCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATA- 1619 || |||||||| || ||||| | ||||| | |||||||||||| || ||||| || Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1620 TTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTT 1679 ||| || |||| ||||||| | ||| || || | || | || |||||||| | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1680 TAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAG 1731 || || | ||||| || ||||||||||||||||||| ||||| || ||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAG 197 >seq490 Length=137872 Score = 91.5 bits (100), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 1566 ATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATATTTACA 1625 |||||| || || ||||| || || |||||||||||||| | ||||| ||||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1626 GTTGGATTGCCAGTCTCT-CTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGT 1684 | | ||||||| || | || ||||||||| | || |||||||||| | || Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1685 ATTGCGGAGCGACGTCATCGATGACGTTATAC 1716 || |||| ||||||||| |||||||||||| Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATAC 70468 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 180/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 1558 TCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCA 1617 || || |||||||| |||||||| | || ||||| ||||||||||||| || || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1618 TA-TTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAG 1676 || ||| || || || ||||| | | || || | | || | || |||| ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1677 CTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAAC 1736 ||| || |||| ||||||||| |||||||||||| || | |||||| | Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1737 CCTAGAATTGAAAT-CAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCC 1795 | ||||| |||| || ||||| | ||||| ||||| | || | | ||| | || Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGTCC 74169 Query 1796 ACATTGTCTTGCCGGTTCTAGAA 1818 | | ||| || ||| |||||||| Sbjct 74168 AAACTGTTTTACCGATTCTAGAA 74146 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 5e-11 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 1585 GGGATCCCACCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTGGATTGCCAGTCTCT 1643 || ||||| ||||||||||||| || ||||| || ||| || |||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1644 CTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATC 1703 ||| || || | || | || |||||||| ||| || | ||||| ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1704 GATGACGTTATACTCGGCATCGTTCGAG 1731 |||||||||||| ||||| || ||| Sbjct 1560 GATGACGTTATATCATGCATCATTTGAG 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8241753831220