Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004647.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq3439 136 7e-29 seq3283 136 7e-29 seq22495 125 1e-25 seq54129 107 3e-20 seq815 102 1e-18 seq77518 100 5e-18 seq33 98.7 2e-17 seq20728 96.9 6e-17 seq5745 96.9 6e-17 seq442 96.9 6e-17 seq953 95.1 2e-16 seq3059 86.0 1e-13 seq1993 80.6 5e-12 seq80468 78.8 2e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 136 bits (150), Expect = 7e-29 Identities = 199/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1661 TCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATG 1720 || |||||| ||||||| | | || || ||||||| || | ||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1721 CCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCC 1780 || ||||||||||||||||| |||||||| || | ||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1781 CCCATGAACTCTTTAAAGTGCTTC------AAATAATGCGGATCGACATCATCAATGACG 1834 || | ||||| || | | |||||| ||||||| |||| ||||||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1835 TTATACCATGCGTCATTTGAATACACTCTTGGGCTT-AAGTCCAAATGGCCGCACAAGTA 1893 ||||||||||| |||||||| ||| | |||| || || |||| | || | ||| Sbjct 810 TTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752 Query 1894 ATTGTGTGGGCCGATGGACCTAGCCCACATTGTTTTGCC 1932 ||||||||||| | || | |||||| |||||| || Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq3283 Length=49157 Score = 136 bits (150), Expect = 7e-29 Identities = 201/280 (72%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1661 TCCAAGAACTCTTTATAGC-TGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAAT 1719 ||||||||| ||||||| | || | || || |||||||| || | ||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1720 GCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGC 1779 || ||||||||||||||||| || ||||| || | |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1780 CCCCATGAACTCTTTAAAGTGCTTC------AAATAATGCGGATCGACATCATCAATGAC 1833 || | ||||| || | | |||||| ||||||| |||| ||| || || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1834 GTTATACCATGCGTCATTTGAATACACTCTTGGGCTT-AAGTCCAAATGGCCGCACAAGT 1892 |||||||||||| |||||||| ||| | |||| || || |||| | || | || Sbjct 2131 GTTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATGT 2073 Query 1893 AATTGTGTGGGCCGATGGACCTAGCCCACATTGTTTTGCC 1932 | ||||||||||| | || | |||||| |||||| || Sbjct 2072 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq22495 Length=567 Score = 125 bits (138), Expect = 1e-25 Identities = 164/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 1688 GGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCG 1747 || || |||||||| || | ||| | |||| || | ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1748 TATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC--- 1804 || || | |||| ||||||| | || || || | ||||| || | | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1805 ---AAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACT 1861 ||||||| |||| || ||||| ||||||||||||||||| |||||||| ||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 192 Query 1862 CTTGGGCTT-AAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCC 1905 |||| || || |||||| || | ||| ||||||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 >seq54129 Length=2260 Score = 107 bits (118), Expect = 3e-20 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1688 GGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCG 1747 || || |||||||| || | ||| | ||||| || ||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1748 TATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC--- 1804 || || | |||| || |||| || || || | ||||| || | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1805 ---AAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATA 1857 ||||||| |||| |||||| || ||||||||||||||| | |||||||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq815 Length=151552 Score = 102 bits (112), Expect = 1e-18 Identities = 175/252 (69%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 1688 GGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCG 1747 || || |||||||| || | ||| | ||||| || |||||||||||| | || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1748 TATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC--- 1804 || || | |||| | ||||| | || || || | ||||| || | | | |||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1805 ---AAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACT 1861 ||||||| | || ||| || || ||||||||||||||||| |||||||| ||| | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC-GT 85246 Query 1862 CTTGGGCTT-AAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCA 1920 |||| || || |||| | || | ||| ||||||| ||| | | | |||||| Sbjct 85245 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCA 85186 Query 1921 CATTGTTTTGCC 1932 || |||| || Sbjct 85185 TGTTATTTTCCC 85174 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Minus Query 1661 TCCAAGAACTCTTTATA-GCTGGAGTTGGGCCCT--GGATTGCATAGGAATATAGTGGGA 1717 |||||||| ||||||| | | | ||| ||| |||||||| || | ||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1718 ATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGG 1777 || || |||||||||||||||| ||| |||| || | ||| || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1778 GCCCCCATGAACTCTTTAAAGTGCT------TCAAATAATGCGGATCGACATCATCAATG 1831 || || | ||||| || | | |||| | |||||| ||| ||||||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1832 ACGTTATACCATGCGTCATTTGAATA 1857 ||||||||||| ||||| || || || Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTA 2228 >seq33 Length=454124 Score = 98.7 bits (108), Expect = 2e-17 Identities = 169/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1690 CCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTA 1749 ||| |||||||| || | ||| ||||| || | ||||||||||||||| |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1750 TTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC----- 1804 || | ||| ||||||| | || | || | ||||| || | | || || Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1805 -AAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCT 1863 |||||| ||| ||| |||||||||||||||||||| ||||| || || || ||| Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1864 TGGGCTTAAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCACAT 1923 | | || |||| | ||| | |||||| ||||| || | || | ||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1924 TGTTTT 1929 |||||| Sbjct 403063 TGTTTT 403058 >seq20728 Length=3653 Score = 96.9 bits (106), Expect = 6e-17 Identities = 112/150 (75%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 1715 GGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTT 1774 ||||| || ||||||||||||| ||| |||||||| || | |||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1775 TGGGCCCCCATGAACTCTTTAAAGTGCTTC------AAATAATGCGGATCGACATCATCA 1828 || || || | ||||| || | | ||||| ||||||| |||| ||| ||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1829 ATGACGTTATACCATGCGTCATTTGAATAC 1858 ||||||||||| ||||| |||||||| ||| Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTAC 1590 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 1661 TCCAAGAACTCTTTATA-GCTGGAGTTGGGCCCT--GGATTGCATAGGAATATAGTGGGA 1717 || |||||| ||||||| | | | ||| ||| |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1718 ATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGG 1777 || || ||||||||||||||||| || ||||| || | ||| ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1778 GCCCCCATGAACTCTTTAAAGTGCT------TCAAATAATGCGGATCGACATCATCAATG 1831 || || ||||||| || | | || | | |||||| ||| || ||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1832 ACGTTATACCATGCGTCATTTGAATA 1857 ||||||||||||||||| || || || Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTA 43713 >seq442 Length=237535 Score = 96.9 bits (106), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 1661 TCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATG 1720 |||||||| ||||||| | || || || |||||||| || ||| | ||||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1721 CCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCC 1780 | |||||||||||||||| |||||||| || | |||| ||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1781 CCCATGAACTCTTTAAAGTGCT------TCAAATAATGCGGATCGACATCATCAATGACG 1834 || | ||||| || | | |||| | ||||||| || | ||| || || || ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1835 TTATACCATGCGTCATTTGAATAC 1858 ||||||| ||| |||||||| ||| Sbjct 22930 TTATACC-TGCATCATTTGAGTAC 22952 >seq953 Length=224861 Score = 95.1 bits (104), Expect = 2e-16 Identities = 175/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 1688 GGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCG 1747 || || |||||||| | | ||| | ||||| || ||||||||||||| || |||||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1748 TATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC--- 1804 || || | |||| ||||| | | || | || | ||||| || | | | ||| Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1805 ---AAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACT 1861 ||||||| |||| ||| || || || |||||||||||||| |||||||| ||| | Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1862 CTTGGGCTTAAGTCC--AAATGGCCGCA-CAAGTAATTGTGTGGGCCGATGGACCTAGCC 1918 | | | || ||| |||| | || | ||| ||||||||||| | || | |||| Sbjct 2020 TTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2076 Query 1919 CACATTGTTTTGCC 1932 || |||||| || Sbjct 2077 CATGCTGTTTTCCC 2090 >seq3059 Length=182465 Score = 86.0 bits (94), Expect = 1e-13 Identities = 125/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1661 TCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATG 1720 ||||||||| ||||| | | | || || |||||||| || | ||| | ||||| Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1721 CCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCC 1780 || ||||||||||||| ||| |||||||| || | |||| | ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1781 CCCATGAACTCTTTAAAGTGCTTC------AAATAATGCGGATCGACATCATCAATG 1831 || | ||||| || | | |||||| ||||||| |||| ||| || |||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 116/164 (71%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 1690 CCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTA 1749 ||| |||||||| || | ||| ||||| || |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1750 TTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1803 || | ||| ||||| | | ||| || | | ||||| || | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1804 CAAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGT 1847 |||||| ||| ||| |||||||||||||||||||| |||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGT 74241 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 117/165 (71%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 1695 GATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGG 1754 ||||||| || | ||| | ||||| || |||||||| ||||| || |||||||| || | Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1755 TATTGCTTTGCCA--GTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTC------AA 1806 ||||| | ||| || | || || || | ||||| || | | |||||| || Sbjct 4333 TATTGGCCTACCATTGTGC---TGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAA 4389 Query 1807 ATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATT 1851 ||||| | | ||| || | ||||||||||||||||| | ||| Sbjct 4390 ATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAATT 4434 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1661 TCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATG 1720 ||||||||| ||||||| | | ||| || |||||||| || | ||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1721 CCTCCTTTAATTTGAACTGGCTTTCCGTATTT 1752 || ||||||||||||||||| |||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702115565780