Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004648.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq33 118 2e-23 seq77518 113 8e-22 seq5745 111 3e-21 seq3283 107 3e-20 seq3439 100 5e-18 seq22495 89.7 9e-15 seq35612 84.2 4e-13 seq4104 84.2 4e-13 seq953 78.8 2e-11 >seq33 Length=454124 Score = 118 bits (130), Expect = 2e-23 Identities = 225/331 (68%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 |||||||||||||| ||| | |||| ||| | |||||| || ||| ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1665 CTCTTTATATGATGACGTTGGGCCT--GGATTGCAGAGGAAGATAGTTGGGATGCCACCT 1722 | ||||||| || || ||| || |||||||| || | |||| ||| || || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1723 TTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1782 |||||||||| ||| || |||||||| | || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1783 AATTCTTTAAAGTGCTTT------AGATAGTGGGGATCAACGTCATCAATGACGTTATAC 1836 || | || | | || ||| | ||| ||| ||||||||||||||||||||| Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATAC 403147 Query 1837 CACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGT 1896 |||||||| || ||| | | | ||| ||| | | || | ||||||||| Sbjct 403146 CACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGT 403087 Query 1897 GGGCCCAACGAACGGGCCCACATTGTCTTTC 1927 || ||||||||||| ||||| | ||| |||| Sbjct 403086 GGACCCAACGAACGTGCCCAAACTGTTTTTC 403056 >seq77518 Length=14724 Score = 113 bits (124), Expect = 8e-22 Identities = 225/333 (68%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 |||||||||||| | ||| | |||| |||| | |||||| || ||||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1665 CTCTTTATATGATGACGTTGGGCCT---GGATTGCAGAGGAAGATAGTTGGGATGCCACC 1721 ||||||| ||| | ||| || |||||||| || | |||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1722 TTTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1781 ||||||||||| || || ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1782 GAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATA 1835 ||| | || | | |||| ||| ||| ||| || ||||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 Query 1836 CCACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATG 1895 ||||||||| || ||| || | ||| ||| | | || | ||||||||| Sbjct 2245 CCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTATG 2186 Query 1896 TGGGCCCAACGAACGGGCCCACATTGTCTTTCC 1928 ||| |||||| |||| ||||| | ||| || || Sbjct 2185 TGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 226/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 1606 AATTCTGCATTCTTTAATGCCCACTCTTT-TAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 ||||| ||||| | ||| | | || ||| |||| |||||| || ||| ||| | Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAA 43515 Query 1665 CTCTTTATATGATGACGTTGGGCCT---GGATTGCAGAGGAAGATAGTTGGGATGCCACC 1721 | ||||||| ||| | ||| || |||||||| | | |||| ||| || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1722 TTTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1781 ||||||||||| ||| || |||||||| | || ||||| | | ||| || || || Sbjct 43576 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTAT 43635 Query 1782 GAATTCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATA 1835 ||| | || | | || | ||| ||| ||| | |||||||||||||||||| Sbjct 43636 GAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATA 43695 Query 1836 CCACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATG 1895 ||| ||||| || || || | | ||| ||| | | || | ||||||||| Sbjct 43696 CCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATG 43755 Query 1896 TGGGCCCAACGAACGGGCCCACATTGTCTTTCC 1928 ||| ||||||||||| ||||| | ||| || || Sbjct 43756 TGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 222/331 (67%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 |||||||||||| | || | ||| ||| | |||||| ||| ||||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1665 CTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTT 1724 | |||||| ||| || || |||||||| || | |||| |||| || || ||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1725 AATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1784 |||||||| ||| ||||||||||| | ||| ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1785 TTCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCA 1838 | || | | |||| ||| ||| | ||| ||||| || |||||||||||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1839 CGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGG 1898 || ||||| |||| || | | | | ||| | | || | || || ||||| Sbjct 2122 TGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGG 2063 Query 1899 GCCCAACGAACGGGCCCACATTGTCTTTCCT 1929 ||| || ||||| ||||| ||| || ||| Sbjct 2062 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 220/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 1606 AATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTAC 1665 ||||||||||| | || | ||| ||| | |||||| ||| ||| ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1666 TCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTTA 1725 |||||| ||| | || || ||||||| || | |||| |||| || || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1726 ATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1785 ||||||| ||| || |||||||| | |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1786 TCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCAC 1839 | || | | |||| ||| ||| | ||| || ||||| |||||||||||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1840 GCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGG 1899 || ||||| |||| || | | | | ||| | | || | || || |||||| Sbjct 801 GCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1900 CCCAACGAACGGGCCCACATTGTCTTTCCT 1929 || || ||||| ||||| ||| || ||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 169/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 ||||||| |||| | ||| | ||| ||| | |||||| ||| ||| ||| | Sbjct 449 GAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAA 390 Query 1665 CTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTT 1724 |||||| ||| | || || |||||||| || | |||| || | || || | ||| Sbjct 389 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTT 330 Query 1725 AATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1784 |||||||| ||| || |||||||| | ||| ||||||| | || || || | ||| Sbjct 329 AATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAA 270 Query 1785 TTCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCA 1838 | || | | |||| ||| ||| | ||| | |||||| |||||||||||||| Sbjct 269 CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCA 210 Query 1839 CGCGTCATT 1847 || ||||| Sbjct 209 TGCATCATT 201 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 |||||||||||| | || | ||| ||| | |||||| ||| ||||||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1665 CTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTT 1724 |||||| ||| | || || |||||||| || | |||| |||| ||||| ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1725 AATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCA 1763 |||||||| ||| || |||||||| | |||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1588 GGGCTGTTGAGGGTGATGAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTC 1647 ||| |||||| | | |||||||||||| | || | ||| ||| | |||||| Sbjct 20926 GGGGTGTTGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTG 20867 Query 1648 TTTTCCTCATCCAAGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATA 1707 ||| ||||||| || |||||| ||| | || || |||||||| || | |||| Sbjct 20866 GACTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATA 20807 Query 1708 GTTGGGATGCCACCTTTAATTTGAATTGGCTTCCCGTACTT 1748 |||| || || ||||||||||||| ||| || |||||||| Sbjct 20806 CTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 218/332 (66%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 1605 GAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTA 1664 |||||||||||| | ||| | ||| ||| | |||||| || ||| ||| | Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAA 1820 Query 1665 CTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTT 1724 |||||| ||| | || || |||||||| | | |||| |||| || || ||||| Sbjct 1821 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTT 1880 Query 1725 AATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1784 ||||||||||| || |||||||| | ||| ||||| | | || | || | ||| Sbjct 1881 AATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAA 1940 Query 1785 TTCTTTAAAGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCA 1838 | || | | | || ||| ||| | ||| ||||| || || ||||||||||| Sbjct 1941 CTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCA 2000 Query 1839 CGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCA-CAGATAATTATGTG 1897 || ||||| |||| || | | | | ||| | | | | || | || || |||| Sbjct 2001 TGCATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTG 2059 Query 1898 GGCCCAACGAACGGGCCCACATTGTCTTTCCT 1929 |||| || ||||| ||||| ||| || ||| Sbjct 2060 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800