Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004650.1 Length=2828 Score E Sequences producing significant alignments: (Bits) Value seq3439 120 5e-24 seq3283 118 2e-23 seq54129 102 1e-18 seq5745 89.7 9e-15 seq20728 84.2 4e-13 seq490 80.6 5e-12 >seq3439 Length=62978 Score = 120 bits (132), Expect = 5e-24 Identities = 201/284 (71%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 1769 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTATTTAC 1828 ||||||| || | |||| | ||||| || ||||||||| ||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1829 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAGGT 1882 ||||| ||||| | ||| || || | ||| | | | | ||||| || | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1883 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-TTTTGGG 1941 | | || ||| ||||| |||||||||||||| ||| || || ||| |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779 Query 1942 CTTAGA-TC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACT 1998 ||| | || ||||| |||| | || ||||| ||||| || || | |||||| || Sbjct 778 ATTAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721 Query 1999 GTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGG 2042 ||||| |||||||| |||||||||||||| |||| ||||| Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 206/290 (71%), Gaps = 16/290 (6%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | ||||| || ||||||||| ||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1824 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT----- 1877 ||| || |||| ||||| | ||| || || | ||| | | | | ||||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1878 -TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-T 1935 || || | || |||||| || |||||||||||||| ||| || || ||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105 Query 1936 TTTGGGCTTAGA-TC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCC 1992 ||||| ||| | || ||||| |||| | || ||||| ||||| || || | ||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1993 CATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGG 2042 ||| ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq54129 Length=2260 Score = 102 bits (112), Expect = 1e-18 Identities = 201/289 (70%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | ||||| || ||||||||| ||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1824 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT----- 1877 ||| || |||| || |||| | ||| || || | ||| | | | ||||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1878 -TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTT 1936 || || | || ||| || || |||||||||||||| || || |||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATG-TT 2081 Query 1937 TTGGGCTTAGA--TC-TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCC 1993 |||| ||| | || ||||| |||| | || ||||| ||| || || | |||| Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCATT-ATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1994 ATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGG 2042 || ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 192/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 1765 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTA- 1823 || |||||||| | | |||| ||||| |||||||||||| ||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1824 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1881 ||| || || || ||||| | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1882 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACT 1935 || ||| || || ||||||||||||||||||||| || ||| ||| | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1936 TTTGGGCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCA 1994 || | | | ||| | || ||||| | |||||| || || ||||| || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1995 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATG 2034 |||||||| || ||||| || | | |||||| |||| Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATG 43816 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 178/256 (70%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 1789 GGAATTCCACCTTTAATTCGAACTGGCTTTCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1847 ||||| || ||||||||| ||| ||| |||||||| ||| || |||| |||| | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG- 1499 Query 1848 CTGGGCCCCCATGAATTCCTTAAAGTGCTTT------AGGTATTGGGGGTTGACGTCATC 1901 ||| || || | ||| | | | | |||||| | || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1902 AATGACGTTATACCAAGCACTGTTGCTGTATAC-TTTTGGGCTTAGA-TCTA-AATGCCC 1958 ||||||||||| || ||| || || ||| |||| | ||| | |||| || | | Sbjct 1560 GATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATAAATCTC 1617 Query 1959 ACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTTGCCTATTCTGCTTGG 2018 | | || ||||| ||| | || || | |||||| ||||||| |||||||| ||| Sbjct 1618 ATT-ATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676 Query 2019 GCCTTCAATAACAATG 2034 ||||||||||| |||| Sbjct 1677 GCCTTCAATAATAATG 1692 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 196/292 (67%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1770 ATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTATTTACA 1829 |||||| |||| || | || ||||||||||||||| | | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1830 GTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT--------TAGG 1881 | | ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1882 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACT-GTTGCTGTATACTTTTGG 1940 | ||| || ||||||||| |||||||||||||| | ||| ||| || ||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1941 GCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTG 1999 | | ||| | || ||||| | || ||||| || || |||||| || |||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 2000 TTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGG 2051 | || || | ||| ||| ||||| |||| | || ||||| ||||| || Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8928849461175