Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004654.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3283 82.4 1e-12 seq3439 78.8 2e-11 >seq3283 Length=49157 Score = 82.4 bits (90), Expect = 1e-12 Identities = 117/165 (71%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 1697 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCG 1756 || || |||||||| || | ||| |||| || || ||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1757 TACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1811 ||||| | ||| ||||| | || || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1812 -TTAGATAGTGGGGATCCACGTCATCAATCACGTTGTACCAAGCA 1855 ||| ||| | ||| ||||| || || ||||| ||||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCA 2119 >seq3439 Length=62978 Score = 78.8 bits (86), Expect = 2e-11 Identities = 112/158 (71%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 1704 GATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1763 ||||||| || | ||| |||| || || ||||||||||||| |||||| |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1764 TGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGAT 1817 |||| ||||| | || || || || | ||| | || | | |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1818 AGTGGGGATCCACGTCATCAATCACGTTGTACCAAGCA 1855 | | ||| || ||||| || ||||| ||||| ||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCA 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230